Uses of Class
edu.sdsc.mbt.viewables.StructureStyles

Packages that use StructureStyles

edu.sdsc.mbt
edu.sdsc.mbt.viewables	This package provides classes which enable molecular biology data to be represented as visible/renderable viewable objects, plus, this package defines a top-level StructureDocument object to encapsulate the complete state of these objects and properties.
edu.sdsc.mbt.viewers.GLViewerImpl
edu.sdsc.sirius.viewers

Uses of StructureStyles in edu.sdsc.mbt

Methods in edu.sdsc.mbt that return StructureStyles

StructureStyles

StructureMap.getStructureStyles() Return the StructureStyles object that describes the style (authored) attributes needed to produce consistant views of StructureMap elements.

Uses of StructureStyles in edu.sdsc.mbt.viewables

Fields in edu.sdsc.mbt.viewables declared as StructureStyles

StructureStyles

StructureStylesEvent.structureStyles The StructureStyles in which the style changed.

Methods in edu.sdsc.mbt.viewables with parameters of type StructureStyles

void	StructureStyles.addStyles(StructureStyles s) This method imports styles from a different StructureStyles object

Uses of StructureStyles in edu.sdsc.mbt.viewers.GLViewerImpl

Fields in edu.sdsc.mbt.viewers.GLViewerImpl declared as StructureStyles

StructureStyles	MonitorRenderable.structureStyles
StructureStyles	MbtRenderable.structureStyles

Methods in edu.sdsc.mbt.viewers.GLViewerImpl with parameters of type StructureStyles

static void	SsGeometry.drawSs(Chain c, javax.media.opengl.GL gl, javax.media.opengl.glu.GLU glu, com.sun.opengl.util.GLUT glut, StructureMap structureMap, StructureStyles styles, boolean ribbon) Builds a scene of the secondary structures, the list of SS being the one produced by the StructureMap argument based on what is explicitely available in the data source file or from the Kabsch-Sander algorithm.
static void	SsGeometry.drawSs(Chain c, javax.media.opengl.GL gl, javax.media.opengl.glu.GLU glu, com.sun.opengl.util.GLUT glut, StructureMap structureMap, StructureStyles styles, boolean ribbon, int helixSmoothingSteps, int strandSmoothingSteps, int turnSmoothingSteps, int coilSmoothingSteps) Builds a scene of the secondary structures, the list of SS being the one produced by the StructureMap argument based on what is explicitely available in the data source file or from the Kabsch-Sander algorithm.
static void	SsGeometry.drawSs(Chain c, javax.media.opengl.GL gl, javax.media.opengl.glu.GLU glu, com.sun.opengl.util.GLUT glut, StructureMap structureMap, StructureStyles styles, boolean ribbon, int helixSmoothingSteps, int strandSmoothingSteps, int turnSmoothingSteps, int coilSmoothingSteps, int helixSsShape) Builds a scene of the secondary structures, the list of SS being the one produced by the StructureMap argument based on what is explicitely available in the data source file or from the Kabsch-Sander algorithm.
static void	SsGeometry.drawSs(Chain c, javax.media.opengl.GL gl, javax.media.opengl.glu.GLU glu, com.sun.opengl.util.GLUT glut, StructureMap structureMap, StructureStyles styles, boolean ribbon, float helixQuality, float strandQuality, float turnQuality, float coilQuality, int helixSmoothingSteps, int strandSmoothingSteps, int turnSmoothingSteps, int coilSmoothingSteps, int helixCsType, int strandCsType, int turnCsType, int coilCsType, int helixSsShape) Builds a scene of the secondary structures, the list of SS being the one produced by the StructureMap argument based on what is explicitely available in the data source file or from the Kabsch-Sander algorithm.
abstract void	Geometry.draw(StructureComponent structureComponent, StructureStyles styles, javax.media.opengl.GL gl, javax.media.opengl.glu.GLU glu, com.sun.opengl.util.GLUT glut) Please complete the missing tags for main
void	ChainGeometry.draw(StructureComponent structureComponent, StructureStyles styles, javax.media.opengl.GL gl, javax.media.opengl.glu.GLU glu, com.sun.opengl.util.GLUT glut) Please complete the missing tags for main
void	ChainGeometry.draw(Chain chain, StructureStyles styles, javax.media.opengl.GL gl, javax.media.opengl.glu.GLU glu, com.sun.opengl.util.GLUT glut) Please complete the missing tags for main
void	BondGeometry.draw(StructureComponent structureComponent, StructureStyles styles, javax.media.opengl.GL gl, javax.media.opengl.glu.GLU glu, com.sun.opengl.util.GLUT glut) Please complete the missing tags for main
void	BondGeometry.draw(Bond bond, StructureStyles structureStyles, javax.media.opengl.GL gl, javax.media.opengl.glu.GLU glu, com.sun.opengl.util.GLUT glut) Please complete the missing tags for main
void	AtomLineGeometry.draw(StructureComponent structureComponent, StructureStyles styles, javax.media.opengl.GL gl, javax.media.opengl.glu.GLU glu, com.sun.opengl.util.GLUT glut) Please complete the missing tags for main
void	AtomLineGeometry.draw(Atom atom, StructureStyles structureStyles, javax.media.opengl.GL gl, javax.media.opengl.glu.GLU glu, com.sun.opengl.util.GLUT glut) Please complete the missing tags for main
void	AtomGeometry.draw(StructureComponent structureComponent, StructureStyles styles, javax.media.opengl.GL gl, javax.media.opengl.glu.GLU glu, com.sun.opengl.util.GLUT glut) Please complete the missing tags for main
void	AtomGeometry.draw(Atom atom, StructureStyles structureStyles, javax.media.opengl.GL gl, javax.media.opengl.glu.GLU glu, com.sun.opengl.util.GLUT glut)

Constructors in edu.sdsc.mbt.viewers.GLViewerImpl with parameters of type StructureStyles

MbtRenderable(StructureComponent structureComponent, StructureStyles styles, Geometry geometry)
Construct a Renderable object.

Uses of StructureStyles in edu.sdsc.sirius.viewers

Methods in edu.sdsc.sirius.viewers with parameters of type StructureStyles

void

StructureViewer.checkDummyAtomsSelection(StructureStyles styles) This method searches through selected atoms and determines whether any atom on the other end of any of the bonds is visible with invisible bonds or a dummy is no longer needed This way the search is only within the selected area, rather than the entire structure