The name type is used for protein names occuring in an entry, which are represented in a flat file as DE lines. This is referring to a possible EC number (ENZYME database cross reference). The gene name type is used for gene information. The name type is used for source organism names. The status attribute provides a known/unknown flag. The protein element stores all the information found in the DE line of a flatfile entry. The domain list is equivalent to the INCLUDES section of the DE line. The component list is equivalent to the CONTAINS section of the DE line. This contains all evidences that are connected to the complete DE line. Defines the locations/origins of the shown sequence (OG line). The citation type stores all information about a citation. The equivalent information in the flatfile can be found in the RA (authors), RT (title), RX (PubMed/MEDLINE/DOI IDs) and RL (citation location information such journal name, volume numbers, pages, etc.) lines. The title of the citation. Stored in the RT line in the flatfile format. The editors of a book. Stored in the RL line in the flatfile format. Only valid for books. Example: RL (In) Magnusson S., Ottesen M., Foltmann B., Dano K., RL Neurath H. (eds.); RL Regulatory proteolytic enzymes and their inhibitors, pp.163-172, RL Pergamon Press, New York (1978). The authors of the citation. Stored in the RA line in the flatfile format, except for citing citation where it is stored in the RL line. Example (standard citation): RA Galinier A., Bleicher F., Negre D., Perriere G., Duclos B., RA Cozzone A.J., Cortay J.-C.; Example (citing citation): RL Unpublished results, cited by: RL Shelnutt J.A., Rousseau D.L., Dethmers J.K., Margoliash E.; RL Biochemistry 20:6485-6497(1981). The location information of an electronic (or online) article. It is in most cases the unprocessed RL line of an electronic article. Examples: RL (In) Plant Gene Register PGR98-023. RL (In) Worm Breeder's Gazette 15(3):34(1998). Used by type: unpublished results. Used by type: patent. Used by type: thesis. Contains all information about the source this citation is referring to (RC line). The used child-element names are equivalent to the tokens used in the RC line. Examples: RC STRAIN=Sprague-Dawley; TISSUE=Liver; RC STRAIN=Holstein; TISSUE=Lymph node, and Mammary gland; RC PLASMID=IncFII R100; Groups the scope (RP lines) and source data (RC lines) lists. Contains a scope regarding a citation. There is no classification yet. (RP lines). Contains all information about the source this citation is referring to (RC line). Stores all information of the reference block in SPTr (RN, RP, RC, RX, RA, RT and RL line). The comment element stores all information found in the CC lines of the flatfile format. If there is a defined structure to the CC comment, the extracted is displayed in the various defined attributes and child-elements. See the documentation of these attributes/elements for more details. If a CC line type does not have a defined structure, the text of this comment is stored in the element. This stored the URIs defined in the WWW and FTP tokens of the database (online information in the XML format) CC comment type. The information of the mass spectrometry comment is stored in the attributes: -molWeight (molecular weight) -mwError (error of the molecular weight) -msMethod (the method used for the mass spectrometry) -range (which amino acids were messured. It's not mentioned if the complete sequence as shown in the entry was measured) If a CC line type contains a "NOTE=", the text of that note is stored in this element. States the name of the online information if there is one. First the molecular weight which has been determined. The accuracy with which the molecular weight has been measured. The method which has been used. Common values are ELECTROSPRAY, MALDI, FAB and PLASMA DESORPTION. Some comments have a status reflecting their reliability. Common values are BY SIMILARITY, POTENTIAL and PROBABLE. Defines the type of the location where RNA editing takes place. Common values are "Displayed", "Not_applicable" and "Undetermined". Stores the type of a comment. These are simply lower case conversions of the flatfile CC comment topics, with two exceptions. "PTM" is an abbreviation and stands for "posttranslational modification" and the CC topic "DATABASE" is translated to "online information", which is a more accurate description of the content of this comment. This element stores information about events that cause an alternative product. Contains all information on a certain isoform including references to possible features defining the sequence. Database cross-references, equivalent to the flatfile format's DR line. The name of the database this cross-reference is referring to. The ID referred to. A location can be either a position or have both a begin and end. Currently there is only one basic feature type, but this will change in future with enhancement of the FT line parsers. The evidence element is equivalent to the actual evidence (**EV line). A (public) SPTr entry Contains a collection of SPTr entries.