<?xml version="1.0" encoding="ISO-8859-1" ?>
<!DOCTYPE pise SYSTEM "PARSER/pise.dtd" [
<!ENTITY emboss_init SYSTEM "XMLDIR/emboss.xml">
]>

<pise>

<head>
<title>STAMPS</title>
<description>Generate alignments for SCOP families in EMBL-format SCOP file (EMBOSS)</description>
<category>protein: structure</category>
<doclink>http://bioweb.pasteur.fr/docs/EMBOSS/stamps.html</doclink>
</head>

<command>stamps</command>

<parameters>

&emboss_init;

<parameter type="InFile" ismandatory="1" issimple="1" ishidden="0">
<name>scopf</name>
<attributes>
	<prompt>Name of scop file for input (embl-like format) (-scopf)</prompt>
	<format>
		<language>perl</language>
		<code>" -scopf=$value"</code>
	</format>
	<group>1</group>
</attributes>
</parameter>

<parameter type="String" ismandatory="1" issimple="1" ishidden="0">
<name>path</name>
<attributes>
	<prompt>Location of alignment files for output (-path)</prompt>
	<vdef>
		<value>./</value>
	</vdef>
	<format>
		<language>perl</language>
		<code>" -path=$value"</code>
	</format>
	<group>2</group>
</attributes>
</parameter>

<parameter type="String" ishidden="1">
<name>auto</name>
<attributes>
	<format>
		<language>perl</language>
		<code>" -auto -stdout"</code>
	</format>
	<group>3</group>
</attributes>
</parameter>

</parameters>
</pise>
