1.0 Multiple Prosite motifs searching Eric Deveaud protein:motifs motifs sig seqfile Protein Sequences perl " $value" 100 8 patterns Pattern File (-f) perl ($value) ? " -f $value" : "" 2 File format : one pattern per line. A pattern consists in motifs definition separated by distance constraints. The format is stricly the following: motif_1 (min,max) motif_2 ... (min,max) motif_n, and so on. . overlapping Allows motifs from pattern to be overlapping (-i) perl ($value) ? " -i" : "" 2 0 reverse Searches motifs in ordered and reverse search order, conserving the distance constraints (-i) perl ($value) ? " -r" : "" 2 0