]> Pretty output of DNA translations (EMBOSS) nucleic:gene finding nucleic:translation http://bioweb.pasteur.fr/docs/EMBOSS/showorf.html showorf &emboss_init; input Input section sequence sequence -- DNA [single sequence] (-sequence) perl " -sequence=$value -sformat=fasta" 1 dna 8 seqfile perl 1 required Required section frames Select one or more values -- Select Frames To Translate [select values] (-frames) 0 None 1 F1 2 F2 3 F3 4 R1 5 R2 6 R3 , 1,2,3,4,5,6 perl " -frames=$value" 2 advanced Advanced section cfile cfile [codon usage table name] (-cfile) 0 1 2 3 4 5 6 Ehum.cut perl ($value && $value ne $vdef)? " -cfile=$value" : "" 3 output Output section outfile outfile (-outfile) outfile.out perl " -outfile=$value" 4 ruler Add a ruler (-ruler) 1 perl ($value)? "" : " -noruler" 5 plabel Number translations (-plabel) 1 perl ($value)? "" : " -noplabel" 6 nlabel Number DNA sequence (-nlabel) 1 perl ($value)? "" : " -nonlabel" 7 width Width of screen (-width) 50 perl (defined $value && $value != $vdef)? " -width=$value" : "" 8 10 auto perl " -auto -stdout" 9