<?xml version="1.0" encoding="ISO-8859-1" ?>
<!DOCTYPE pise SYSTEM "PARSER/pise.dtd">

<pise>

  <head>
    <title>PYRAMIDS</title>
    <description>pyreval - pyramidal analysis tool for sequence clustering</description>
    <authors>JC AUDE</authors>
    <category>phylogeny</category>
  </head>

<command>pyreval</command>

<parameters>

<parameter iscommand="1" ishidden="1" issimple="1" type="String">
<name>pyreval</name>
<attributes>

	<format>
		<language>seqlab</language>
		<code>pyreval</code>
		<language>perl</language>
		<code>"pyreval"</code>
	</format>
	<group>0</group>

</attributes>
</parameter>

<parameter ismandatory="1" issimple="1" type="InFile">
<name>pyr_file</name>
<attributes>

	<prompt>Pyramidal representations file (.pyr or .pyt)</prompt>
	<format>
		<language>perl</language>
		<code>" $value"</code>
	</format>
	<group>2</group>
	<pipe>
		<pipetype>pyramid_file</pipetype>
			<language>perl</language>
			<code>1</code>
	</pipe>
	<withpipe>
		<pipetype>pyramid_file</pipetype>
			<parametername>uti_file</parametername>
	</withpipe>

</attributes>
</parameter>

<parameter ismandatory="1" issimple="1" type="InFile">
<name>uti_file</name>
<attributes>

	<prompt>Pyramids informations file (.uti)</prompt>
	<format>
		<language>perl</language>
		<code>" $value"</code>
	</format>
	<group>1</group>

</attributes>
</parameter>


</parameters>
</pise>
