]> Search a PROSITE motif database with a protein sequence (EMBOSS) protein:motifs http://bioweb.pasteur.fr/docs/EMBOSS/patmatmotifs.html patmatmotifs &emboss_init; input Input section sequence sequence -- Protein [single sequence] (-sequence) perl " -sequence=$value -sformat=fasta" 1 protein 8 seqfile perl 1 advanced Advanced section full Provide full documentation for matching patterns (-full) 0 perl ($value)? " -full" : "" 2 prune Ignore simple patterns (-prune) 1 perl ($value)? "" : " -noprune" 3 Ignore simple patterns. If this is true then these simple post-translational modification sites are not reported: myristyl, asn_glycosylation, camp_phospho_site, pkc_phospho_site, ck2_phospho_site, and tyr_phospho_site. output Output section outfile outfile (-outfile) outfile.out perl " -outfile=$value" 4 auto perl " -auto -stdout" 6