1.3 parciquart - quartet inference by maximum parsimony method Berry phylogeny parciquart parciquart seqlab parciquart perl "parciquart" 0 infile Nucleotide Sequences Alignement File perl "ln -s $infile infile.nuc; " -10 11 readseq_ok_alig perl 1 weight Weight of the transversion events compared to the transition events (-w) perl (defined $value)? " -w$value" : "" 1 Indicate the weight of the transversion events compared to the transition events when computing the parcimony value of a topology. Eg, -k2.5 gives 2.5 times more weight to transversions than to transitions. gap Use gap position whenever is possible for computing the distance between two taxa (-g) perl ($value)? " -g1" : "" 0 1 If out, drop any position that contains a gap from the whole analysis. quartfile quartfile quartfile perl 1