]> Report CpG rich areas (EMBOSS) cpg islands dna features http://www.sanger.ac.uk/Software/EMBOSS/Apps/newcpgreport.shtml newcpgreport &emboss_init; sequence sequence -- DNA [sequences] (-sequence) perl " -sequence=$value -sformat=fasta" 1 dna 8 window Window size (-window) 100 perl (defined $value && $value != $vdef)? " -window=$value" : "" 2 1 acd $(sequence.end) shift Shift increment (-shift) 1 perl (defined $value && $value != $vdef)? " -shift=$value" : "" 3 1 acd $window minlen Minimum Length (-minlen) 200 perl (defined $value && $value != $vdef)? " -minlen=$value" : "" 4 1 acd $(sequence.end) minoe Minimum observed/expected (-minoe) 0.6 perl (defined $value && $value != $vdef)? " -minoe=$value" : "" 5 0. 10. minpc Minimum percentage (-minpc) 50. perl (defined $value && $value != $vdef)? " -minpc=$value" : "" 6 0. 100. outfile outfile (-outfile) outfile.out perl " -outfile=$value" 7 obsexp Show observed/expected threshold line (-obsexp) 1 perl ($value)? "" : " -noobsexp" 8 cg Show CpG rich regions (-cg) 1 perl ($value)? "" : " -nocg" 9 pc Show percentage line (-pc) 1 perl ($value)? "" : " -nopc" 10 auto perl " -auto -stdout" 11