]> Predicts coils protein secondary structure (EMBOSS) protein:2d structure http://bioweb.pasteur.fr/docs/EMBOSS/newcoils.html newcoils &emboss_init; input Input section sequence sequence -- PureProtein [sequences] (-sequence) perl " -sequence=$value -sformat=fasta" 1 pureprotein 8 seqsfile perl 1 window Window size (-window) 21 perl (defined $value && $value != $vdef)? " -window=$value" : "" 2 1 acd $sequence.end weighted weighted value (-weighted) 0 perl (defined $value && $value != $vdef)? " -weighted=$value" : "" 3 verb verb - matrix file (-verb) 0 perl (defined $value && $value != $vdef)? " -verb=$value" : "" 4 mode Display Mode (-mode) 0 perl (defined $value && $value != $vdef)? " -mode=$value" : "" 5 2 minseg min number of seqments (-minseg) 1 perl (defined $value && $value != $vdef)? " -minseg=$value" : "" 6 10 minp Minimum p (-minp) 0.50 perl (defined $value && $value != $vdef)? " -minp=$value" : "" 7 0. 100. datafile weight and matrix file (-datafile) perl ($value && $value ne $vdef)? " -datafile=$value" : "" 8 output Output section outfile outfile (-outfile) outfile.out perl " -outfile=$value" 9 auto perl " -auto -stdout" 10