SAM
makehist - create a histogram from a score file
R. Hughey, A. Krogh
makehist
makehist
seqlab
makehist
perl
"makehist"
0
run
Run name
perl
" $value"
test
1
Nllfile
Score file (-Nllfile)
perl
" -Nllfile $value"
2
sam_score
perl
1
outfiles
*.ps *.data *.plt
output
Output options
2
histbins
Number of bins (-histbins)
perl
($value && $value != $vdef)? " -histbins $value" : ""
10
2
plotps
Creates a postscript file (-plotps)
perl
($value && $value ne $vdef)? " -plotps $value" : ""
1
2
0
1
2
3
plot_options
Plot options
2
plotmax
Highest Y axis value (-plotmax)
perl
(defined $value)? " -plotmax $value" : ""
2
plotmin
Lowest Y axis value (-plotmin)
perl
(defined $value)? " -plotmin $value" : ""
2
Y axis calculated internally if plotmax = plotmin
plotleft
Lowest X axis value (-plotleft)
perl
(defined $value)? " -plotleft $value" : ""
2
plotright
Highest X axis value (-plotright)
perl
(defined $value)? " -plotright $value" : ""
2
X axis calculated internally if plotleft = plotright
plotline
Vertical line at plotline if <> 0 (-plotline)
perl
(defined $value)? " -plotline $value" : ""
2
plotnegate
Negate scores (-plotnegate)
perl
($value)? " -plotnegate 1" : ""
0
2