]> Reads coordinate files and writes inter-chain contact files (EMBOSS) protein:3d structure http://bioweb.pasteur.fr/docs/EMBOSS/interface.html interface &emboss_init; in Coordinate file for input (embl-like format) (-in) perl " -in=$value" 1 out Contact file for output (-out) test.con perl " -out=$value" 2 thresh Threshold contact distance (-thresh) 6.0 perl " -thresh=$value" 3 ignore Threshold ignore distance (-ignore) 20.0 perl (defined $value && $value != $vdef)? " -ignore=$value" : "" 4 If any two atoms from two different residues are at least this distance apart then no futher inter-atomic contacts will be checked for for that residue pair . This speeds the calculation up considerably. vdwf Name of data file with van der Waals radii (-vdwf) Evdw.dat perl ($value && $value ne $vdef)? " -vdwf=$value" : "" 5 conerrf Name of log file for the build (-conerrf) interface.log perl ($value && $value ne $vdef)? " -conerrf=$value" : "" 6 auto perl " -auto -stdout" 7