]> Displays some simple information about sequences (EMBOSS) information http://bioweb.pasteur.fr/docs/EMBOSS/infoseq.html infoseq &emboss_init; input Input section sequence sequence -- gapany [sequences] (-sequence) perl " -sequence=$value -sformat=fasta" 1 gapany 8 seqsfile perl 1 output Output section outfile outfile (-outfile) stdout perl ($value && $value ne $vdef)? " -outfile=$value" : "" 2 If you enter the name of a file here then this program will write the sequence details into that file. html Format output as an HTML table (-html) 0 perl ($value)? " -html" : "" 3 only Display the specified columns (-only) 0 perl ($value)? " -only" : "" 4 This is a way of shortening the command line if you only want a few things to be displayed. Instead of specifying: <BR> '-nohead -noname -noacc -notype -nopgc -nodesc' <BR> to get only the length output, you can specify <BR> '-only -length' heading Display column headings (-heading) acd @(!$(only)) perl ($value)? " -heading" : "" 5 usa Display the USA of the sequence (-usa) acd @(!$(only)) perl ($value)? " -usa" : "" 6 name Display 'name' column (-name) acd @(!$(only)) perl ($value)? " -name" : "" 7 accession Display 'accession' column (-accession) acd @(!$(only)) perl ($value)? " -accession" : "" 8 gi Display 'GI' column (-gi) 0 perl ($value)? " -gi" : "" 9 version Display 'version' column (-version) 0 perl ($value)? " -version" : "" 10 type Display 'type' column (-type) acd @(!$(only)) perl ($value)? " -type" : "" 11 length Display 'length' column (-length) acd @(!$(only)) perl ($value)? " -length" : "" 12 pgc Display 'percent GC content' column (-pgc) acd @(!$(only)) perl ($value)? " -pgc" : "" 13 description Display 'description' column (-description) acd @(!$(only)) perl ($value)? " -description" : "" 14 auto perl " -auto -stdout" 15