1.0 fetch a database entry N. Joly golden golden perl "golden" 0 db Database perl " $db:" genbank 2 embl embl genbank genbank genpept genpept imgt imgt nrl3d nrl3d prosite prosite refseq refseq uniprot uniprot embl query query (Entry name or Accesion number) perl "$value" 3 ac Search with Accession number only (except nrl3d) (-a) perl ($value) ? " -a" : "" 0 1 No Accesion number for Nrl3d perl $ac and $db eq "nrl3d" id Search with entry name only (-i) perl ($value) ? " -i" : "" 0 1 outfile perl "" "golden.out" seqfile perl ! $entrynameonly output Ouput convert Change output format perl ($value) ? " | fmtseq -p " : "" 0 100 seqformat perl $convert Output Format perl " -f$value" 9 110 1 1. Raw 2 2. Plain 3 3. EMBL 4 4. Swiss-Prot 5 5. GenBank 6 6. PIR (codata) 7 7. ASN.1 8 8. FASTA (Pearson) 9 9. FASTA 12 12. NBRF 13 13. NBRF-old 14 14. IG/Stanford 15 15. IG-old 16 16. GCG 17 17. MSF 18 18. PHYLIP 19 19. PHYLIP-Interleaved 20 20. PHYLIP-Sequential 21 21. Clustalw 22 22. Pretty