<?xml version="1.0" encoding="ISO-8859-1" ?>
<!DOCTYPE pise SYSTEM "PARSER/pise.dtd">

<pise>

  <head>
    <title>gb2xml</title>
    <description>Genbank to XML conversion tool</description>
    <authors>P. Bouige</authors>
    <category>format</category>
  </head>


<command>gb2xml</command>

<parameters>

<parameter iscommand="1" ishidden="1" issimple="1" type="String">
<name>gb2xml</name>
<attributes>

	<format>
		<language>seqlab</language>
		<code>gb2xml</code>
		<language>perl</language>
		<code>"gb2xml"</code>
	</format>
	<group>0</group>

</attributes>
</parameter>

<parameter ismandatory="1" issimple="1" type="String">
<name>query</name>
<attributes>

	<precond>
	  <language>perl</language>
	  <code>$access ne "f"</code>
	</precond>
	<prompt>Accession</prompt>
	<format>
		<language>perl</language>
		<code>" $value"</code>
	</format>
	<group>2</group>

</attributes>
</parameter>

<parameter type="Excl">
<name>access</name>
<attributes>

	<prompt>Access method</prompt>
	<vlist>
	  <value>e</value>
	  <label>fetch</label>
	  <value>g</value>
	  <label>SRS</label>
	  <value>f</value>
	  <label>file</label>
	</vlist>
	<vdef>
	  <value>e</value>
	</vdef>
	<format>
		<language>perl</language>
		<code>" -$value"</code>
	</format>
	<group>1</group>

</attributes>
</parameter>

<parameter ismandatory="1" type="InFile">
<name>file</name>
<attributes>
	<precond>
	  <language>perl</language>
	  <code>$access eq "f"</code>
	</precond>
	<prompt>File</prompt>
	<format>
		<language>perl</language>
		<code>" $value"</code>
	</format>
	<group>2</group>

</attributes>
</parameter>

<parameter ishidden="1" type="String">
<name>xmldtdcopy</name>
<attributes>

	<format>
		<language>perl</language>
		<code>"; cp /local/gensoft/lib/pasteur/genbank.dtd ."</code>
	</format>
	<group>100</group>

</attributes>
</parameter>

<parameter type="Results">
<name>dtdfile</name>
<attributes>

	<filenames>genbank.dtd</filenames>

</attributes>
</parameter>


</parameters>
</pise>
