]> Reads clean coordinate files and writes file of protein-heterogen contact data. (EMBOSS) utils:database creation http://bioweb.pasteur.fr/docs/EMBOSS/funky.html funky &emboss_init; input input Section prot Location of protein coordinate files for input (embl-like format) (-prot) ./ perl " -prot=$value" 1 protextn Extension of protein coordinate files (embl-like format) (-protextn) .pxyz perl " -protextn=$value" 2 dom Location of domain coordinate files for input (embl-like format) (-dom) ./ perl " -dom=$value" 3 domextn Extension of domain coordinate files (embl-like format) (-domextn) .pxyz perl " -domextn=$value" 4 dic Name of dictionary of heterogen groups (-dic) perl ($value && $value ne $vdef)? " -dic=$value" : "" 5 scop Name of scop file for input (embl-like format) (-scop) perl ($value && $value ne $vdef)? " -scop=$value" : "" 6 vdwf Name of data file with van der Waals radii (-vdwf) perl ($value && $value ne $vdef)? " -vdwf=$value" : "" 7 required required Section thresh Threshold contact distance (-thresh) 1.0 perl " -thresh=$value" 8 output output Section outf Name of output file (-outf) funky.out perl " -outf=$value" 9 logf Name of log file (-logf) funky.log perl ($value && $value ne $vdef)? " -logf=$value" : "" 10 auto perl " -auto -stdout" 11