]> Extract regions from a sequence (EMBOSS) edit http://bioweb.pasteur.fr/docs/EMBOSS/extractseq.html extractseq &emboss_init; input Input section sequence sequence -- any [single sequence] (-sequence) perl " -sequence=$value -sformat=fasta" 1 any 8 seqfile perl 1 required Required section regions Regions to extract (eg: 4-57,78-94) (-regions) acd $sequence.begin-$sequence.end perl " -regions=$value" 2 Regions to extract. <BR> A set of regions is specified by a set of pairs of positions. <BR> The positions are integers. <BR> They are separated by any non-digit, non-alpha character. <BR> Examples of region specifications are: <BR> 24-45, 56-78 <BR> 1:45, 67=99;765..888 <BR> 1,5,8,10,23,45,57,99 advanced Advanced section separate Write regions to separate sequences (-separate) 0 perl ($value)? " -separate" : "" 3 If this is set true then each specified region is written out as a separate sequence. The name of the sequence is created from the name of the original sequence with the start and end positions of the range appended with underscore characters between them, eg: XYZ region 2 to 34 is written as: XYZ_2_34 output Output section outseq outseq (-outseq) outseq.out perl " -outseq=$value" 4 seqsfile perl 1 outseq_sformat Output format for: outseq fasta fasta gcg gcg phylip phylip embl embl swiss swiss ncbi ncbi nbrf nbrf genbank genbank ig ig codata codata strider strider acedb acedb staden staden text text fitch fitch msf msf clustal clustal phylip phylip phylip3 phylip3 asn1 asn1 fasta perl " -osformat=$value" 5 auto perl " -auto -stdout" 6