DSC
1.2a
Discrimination of protein Secondary structure Class
R. D. King, M.J.E. Sternberg
Identification and application of the concepts important for accurate and reliable protein secondary structure prediction by Ross D. King and Michael J.E. Sternberg (Protein Science).
protein:2d structure
dsc
dsc
seqlab
dsc
perl
"dsc -m"
0
seq
Protein sequence(s) File
perl
" $value"
15
10
readseq_ok_alig
perl
1
control
Control parameters
1
poorly
Turn off removal of poorly Aligned sections (-a)
perl
($value)? " -a":""
0
1
isolated
Stop automatic removal of Isolated predictions (-i)
perl
($value)? " -i":""
0
1
filtering
Level of Filtering of predictions (-f)
perl
(defined $value && $value != $vdef)? " -f$value":""
1
1
DSC incorporates rules to filter predictions. As default these rules are set on. These rules can be used recursively by setting the filter level, e.g. setting the flag to 2 would run the rules twice, 0 would not apply any filtering, level 1 is default.
seqlen
Length of sequence used to determine poor alignment (-l)
perl
(defined $value)? " -l$value":""
1
identity
Threshold peRcentage of identity used to determine poor alignment (-r)
perl
(defined $value)? " -r$value":""
1
output
Output parameters
1
casp
CASP output format (-c)
perl
($value)? " -c":""
0
1