<?xml version="1.0" encoding="ISO-8859-1" ?>
<!DOCTYPE pise SYSTEM "PARSER/pise.dtd">

<pise>

  <head>
    <title>Pyramids</title>
    <description>drawpyr - pyramidal analysis tool for sequence  clustering</description>
    <authors>JC AUDE</authors>
    <category>phylogeny</category>
</head>


<command>drawpyr</command>

<parameters>

<parameter iscommand="1" ishidden="1" issimple="1" type="String">
<name>drawpyr</name>
<attributes>

	<format>
		<language>seqlab</language>
		<code>drawpyr</code>
		<language>perl</language>
		<code>"drawpyr"</code>
	</format>
	<group>0</group>

</attributes>
</parameter>

<parameter ismandatory="1" issimple="1" type="InFile">
<name>infile</name>
<attributes>

	<prompt>Pyramidal representations file (.pyr or .pyt)</prompt>
	<format>
		<language>perl</language>
		<code>" $value"</code>
	</format>
	<group>3</group>
	<pipe>
		<pipetype>pyramid_file</pipetype>
			<language>perl</language>
			<code>1</code>
	</pipe>

</attributes>
</parameter>

<parameter issimple="1" type="Excl">
<name>image_format</name>
<attributes>

	<prompt>Image format (-F)</prompt>
	<format>
		<language>perl</language>
		<code>" -F $value"</code>
	</format>
	<vdef><value>GIF</value></vdef>
	<group>2</group>
	<vlist>
		<value>GIF</value>
		<label>gif</label>
		<value>PS</value>
		<label>Postscript</label>
		<value>EPS</value>
		<label>Encapsulated postscript</label>
		<value>GW3</value>
		<label>gif for web usage [800x1200]</label>
		<value>FIG</value>
		<label>fig (Xfig 3.1 format)</label>
	</vlist>

</attributes>
</parameter>

<parameter type="Switch">
<name>qual</name>
<attributes>

	<prompt>Display quality information (-Q)</prompt>
	<format>
		<language>perl</language>
		<code>($value)? " -Q" : ""</code>
	</format>
	<vdef><value>0</value></vdef>
	<group>1</group>

</attributes>
</parameter>

<parameter ishidden="1" type="OutFile">
<name>out_file</name>
<attributes>

	<format>
		<language>perl</language>
		<code>" image"</code>
	</format>
	<vdef><value>image</value></vdef>
	<group>4</group>

</attributes>
</parameter>

<parameter type="Results">
<name>res</name>
<attributes>

	<filenames>*.gif *.*ps *.fig</filenames>

</attributes>
</parameter>


</parameters>
</pise>
