]> Build domain coordinate files (EMBOSS) utils:database creation http://bioweb.pasteur.fr/docs/EMBOSS/domainer.html domainer &emboss_init; input input Section scop Name of scop file for input (embl-like format) (-scop) perl " -scop=$value" 1 cpdb Location of coordinate files for input (embl-like format) (-cpdb) ./ perl " -cpdb=$value" 2 output output Section cpdbscop Location of coordinate files for output (embl-like format) (-cpdbscop) ./ perl " -cpdbscop=$value" 3 cpdbextn Extension of coordinate files (embl-like format) (-cpdbextn) .pxyz perl " -cpdbextn=$value" 4 pdbscop Location of coordinate files for output (pdb format) (-pdbscop) ./ perl " -pdbscop=$value" 5 pdbextn Extension of coordinate files (pdb format) (-pdbextn) .ent perl " -pdbextn=$value" 6 cpdberrf Name of log file for the embl-like format build (-cpdberrf) domainer.log1 perl " -cpdberrf=$value" 7 pdberrf Name of log file for the pdb format build (-pdberrf) domainer.log2 perl " -pdberrf=$value" 8 auto perl " -auto -stdout" 9