]> Reports all CpG rich regions (EMBOSS) nucleic:cpg islands http://bioweb.pasteur.fr/docs/EMBOSS/cpgreport.html cpgreport &emboss_init; input Input section sequence sequence -- DNA [sequences] (-sequence) perl " -sequence=$value -sformat=fasta" 1 dna 8 seqsfile perl 1 required Required section score CpG score (-score) 17 perl " -score=$value" 2 This sets the score for each CG sequence found. A value of 17 is more sensitive, but 28 has also been used with some success. 1 200 output Output section outfile outfile (-outfile) outfile.out perl " -outfile=$value" 3 featout featout -- nucleotide (-featout) featout.out perl " -featout=$value" 4 File for output features featout_offormat Feature output format (-offormat) perl ($value)? " -offormat=$value" : "" embl embl gff gff swiss swiss pir pir nbrf nbrf gff 4 auto perl " -auto -stdout" 5