Coils2 Prediction of Coiled Coil Regions in Proteins Lupas, A., et al. Lupas, A., Van Dyke, M., and Stock, J. (1991) Predicting Coled Coils from Protein Sequences, Science 252:1162-1164. http://www.ch.embnet.org/software/coils/COILS_doc.html coils2 coils2 perl "coils2 < params" 0 query Sequence File perl "$value\\n" 1 8 seqfile perl 1 params out_file perl "coils2.out\\n" 2 params scoring matrix Scoring matrix perl "$value\\n" 2 3 1 2 params Weight for positions a and d 2.5 fold weighting for positions a,d perl "$value\\n" N 4 Y N params output_options perl "p\\n" 5 params tmp_params params