2.0 build-icm - build a model S. Salzberg A.L. Delcher, D. Harmon, S. Kasif, O. White, and S.L. Salzberg. Improved microbial gene identification with GLIMMER. Nucleic Acids Research, 27:23, 4636-4641. S. Salzberg, A. Delcher, S. Kasif, and O. White. Microbial gene identification using interpolated Markov models. Nucleic Acids Research 26:2 (1998), 544-548. http://bioweb.pasteur.fr/docs/gensoft-na.html#GLIMMER build_icm build_icm perl "build-icm" 0 list_orfs ORFs list file (as produced by glimmer-extract) perl "< $value" 10 orfs perl 1 Format should be one string per line. Each line has an ID string followed by white space followed by the sequence itself. Use the 'glimmer_extract' program to generate this file. icm model.out 20 model perl 1 perl ! $text_out icm_text model.txt 20 perl $text_out text_out Print model in text format (-t) instead of binary format (-b) perl ($value) ? " -t" : "" 0 2