4.2 alignfit Russell, Barton alignfit alignfit seqlab alignfit perl "alignfit" 0 blcfile AMPS Block File (.blc) perl " -f $value" 1 amps_blc_file perl 1 domainfile Domain file (-d) perl " -d $value" 2 stamp_domains_file perl 1 trans_file *.trans stamp_trans_file perl 1