]> Reads ABI file and display the trace (EMBOSS) display http://bioweb.pasteur.fr/docs/EMBOSS/abiview.html abiview &emboss_init; input Input section infile ABI trace file (-infile) perl " -infile=$value" 1 output Output section outseq outseq -- dna (-outseq) outseq.out perl " -outseq=$value" 2 seqfile perl 1 outseq_sformat Output format for: outseq -- dna fasta fasta gcg gcg phylip phylip embl embl swiss swiss ncbi ncbi nbrf nbrf genbank genbank ig ig codata codata strider strider acedb acedb staden staden text text fitch fitch msf msf clustal clustal phylip phylip phylip3 phylip3 asn1 asn1 fasta perl " -osformat=$value" 3 graph graph (-graph) x11 x11 hp7470 hp7470 postscript postscript cps cps hp7580 hp7580 null null data data colourps colourps text text none none tek4107t tek4107t tekt tekt xwindows xwindows hpgl hpgl xterm xterm meta meta ps ps tek tek png png tektronics tektronics postscript perl ($value)? " -graph=$value" : "" 4 startbase First base to report or display (-startbase) 0 perl (defined $value && $value != $vdef)? " -startbase=$value" : "" 5 endbase Last base to report or display (-endbase) 0 perl (defined $value && $value != $vdef)? " -endbase=$value" : "" 6 Last sequence base to report or display. If the default is set to zero then the value of this is taken as the maximum number of bases. separate Separate the trace graphs for the 4 bases (-separate) 0 perl ($value)? " -separate" : "" 7 yticks Display y-axis ticks (-yticks) 0 perl ($value)? " -yticks" : "" 8 sequence Display the sequence on the graph (-sequence) 1 perl ($value)? "" : " -nosequence" 9 window Sequence display window size (-window) 40 perl (defined $value && $value != $vdef)? " -window=$value" : "" 10 bases Base graphs to be displayed (-bases) GATC perl ($value && $value ne $vdef)? " -bases=$value" : "" 11 auto perl " -auto -stdout" 12 psresults_graph perl $graph eq "postscript" || $graph eq "ps" || $graph eq "colourps" || $graph eq "cps" *.ps metaresults_graph perl $graph eq "meta" *.meta dataresults_graph perl $graph eq "data" *.dat pngresults_graph perl $graph eq "png" *.png *.2 *.3 hpglresults_graph perl $graph =~ /hp/ *.hpgl