PROCESSING CONTIG 474194. There are 2 atac rows with this contig Showing alignment of atac rows: M u H209 r165 474194 0 93 1 22 45808943 93 1 M u H210 r165 474194 98 47 1 22 45809038 47 1 Skipping these rows because cgap=5 and rgap=2 PROCESSING CONTIG 479796. There are 2 atac rows with this contig Showing alignment of atac rows: M u H291 r231 479796 0 63 1 22 15749921 63 -1 M u H292 r231 479796 97 46 1 22 15749846 46 -1 Skipping these rows because cgap=34 and rgap=29 PROCESSING CONTIG 486948. There are 2 atac rows with this contig Showing alignment of atac rows: M u H392 r312 486948 0 62 1 22 21970743 62 -1 M u H393 r312 486948 81 68 1 22 21970647 68 -1 Skipping these rows because cgap=19 and rgap=28 PROCESSING CONTIG 493242. There are 2 atac rows with this contig Showing alignment of atac rows: M u H489 r384 493242 1 74 1 22 17310748 74 1 M u H490 r384 493242 80 72 1 22 17310826 72 1 Skipping these rows because cgap=5 and rgap=4 PROCESSING CONTIG 496674. There are 2 atac rows with this contig Showing alignment of atac rows: M u H533 r418 496674 0 59 1 22 16773793 59 -1 M u H534 r418 496674 59 94 1 22 16773698 94 -1 CTGGAGTCAGCTGGCAGAGACTCACAGATGCCTGGAAACCTGGCATCACCTCCTCTTCC-CCCCCAGCCCCCAACCCGGCTCCTCACTTCCTCTACCCCTTCCTTGCACACCTTGGCTTTTCAGTTTCTGGGATTTCTGGCACCTTCCTGCCAG ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| CTGGAGTCAGCTGGCAGAGACTCACAGATGCCTGGAAACCTGGCATCACCTCCTCTTCCTCCCCCAGCCCCCAACCCGGCTCCTCACTTCCTCTACCCCTTCCTTGCACACCTTGGCTTTTCAGTTTCTGGGATTTCTGGCACCTTCCTGCCAG PROCESSING CONTIG 497748. There are 2 atac rows with this contig Showing alignment of atac rows: M u H551 r430 497748 0 43 1 22 41760934 43 1 M u H552 r430 497748 48 101 1 22 41760983 101 1 Skipping these rows because cgap=5 and rgap=6 PROCESSING CONTIG 505252. There are 2 atac rows with this contig Showing alignment of atac rows: M u H653 r506 505252 1 41 1 22 14444858 41 1 M u H654 r506 505252 44 87 1 22 14444903 87 1 Skipping these rows because cgap=2 and rgap=4 PROCESSING CONTIG 510362. There are 2 atac rows with this contig Showing alignment of atac rows: M u H729 r563 510362 13 51 1 22 15733263 51 -1 M u H728 r563 510362 65 93 1 22 15733170 93 -1 TAGAAGCTGTGCATGAATGCCAGTCCTTGCATCTGTCTTGGAACTCACAGAGAGCTCTTTTCCCATGGCTTTAAGCAATACTCAAAAAGACTAGCATACCTGAATTTCCTAGTCCTATGTTTTTTTCATCCAACAGCCAGTCTTG ||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| TAGAAGCTGTGCATGAATGCCAGTCCTTGTATCTGCCTTGGAACTCACAGA-AGCTCTTTTCCCATGGCTTTAAGCAATACTCAAATAGACTAGCATACCTGAATTTCCTAGTCCTATGTTTTTTTCATCCAACAGCCAGTCTTG PROCESSING CONTIG 515386. There are 2 atac rows with this contig Showing alignment of atac rows: M u H801 r618 515386 0 72 1 22 49590811 72 1 M u H803 r618 515386 86 75 1 22 49591217 75 1 Skipping these rows because cgap=14 and rgap=334 PROCESSING CONTIG 518984. There are 2 atac rows with this contig Showing alignment of atac rows: M u H861 r665 518984 1 86 1 22 22579924 86 -1 M u H862 r665 518984 99 63 1 22 22579850 63 -1 Skipping these rows because cgap=12 and rgap=11 PROCESSING CONTIG 527752. There are 2 atac rows with this contig Showing alignment of atac rows: M u H1000 r765 527752 0 70 1 22 47462814 70 -1 M u H1001 r765 527752 74 93 1 22 47462720 93 -1 Skipping these rows because cgap=4 and rgap=1 PROCESSING CONTIG 539324. There are 2 atac rows with this contig Showing alignment of atac rows: M u H1211 r907 539324 0 62 1 22 31272868 62 1 M u H1212 r907 539324 69 105 1 22 31272933 105 1 Skipping these rows because cgap=7 and rgap=3 PROCESSING CONTIG 549028. There are 2 atac rows with this contig Showing alignment of atac rows: M u H1391 r1031 549028 1 57 1 22 29404949 57 -1 M u H1392R r1031 549028 119 61 1 22 29404828 61 -1 Skipping these rows because cgap=61 and rgap=60 PROCESSING CONTIG 550932. There are 2 atac rows with this contig Showing alignment of atac rows: M u H1425 r1055 550932 0 77 1 22 15487110 77 -1 M u H1427 r1055 550932 78 104 1 22 15487006 104 -1 GTCAAGTGTTGTTGTGAATGTGTATGTGTAGGAACCATCATGCATTATTCAGGAGATGCAGACTGGTATAACCATTGTGAGAGCAATAGGCAGTATTCAGTCAAATTCAAAATATGCAATCCCATGGCCCATCAAGTCCTGTTTCATATTCCTACAGAAATACTCAAACAGGTCTATAGGGG |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| GTCAAGTGTTGTTGTGAATGTGTATGTGTAGGAACCATCATGCATTGTTCAGGAGATGCAGACTGGTATAACCATTG-GAGAGCAATAGGCAGTATTCAGTCAAATTCAAAATATGCAATCCCATGGCCCATCAAGTCCTGTTTCATGTTCCTACAGAAATACTCAAACAGGTCTATAGGGG PROCESSING CONTIG 553564. There are 2 atac rows with this contig Showing alignment of atac rows: M u H1476 r1093 553564 1 75 1 22 20970319 75 1 M u H1478 r1093 553564 80 43 1 22 20970408 43 1 Skipping these rows because cgap=4 and rgap=14 PROCESSING CONTIG 554970. There are 2 atac rows with this contig Showing alignment of atac rows: M u H1501 r1112 554970 1 46 1 22 15324418 46 1 M u H1503 r1112 554970 95 90 1 22 15324493 90 1 Skipping these rows because cgap=48 and rgap=29 PROCESSING CONTIG 555372. There are 2 atac rows with this contig Showing alignment of atac rows: M u H1516 r1119 555372 0 61 1 22 14489665 61 -1 M u H1517 r1119 555372 65 120 1 22 14489542 120 -1 Skipping these rows because cgap=4 and rgap=3 PROCESSING CONTIG 556286. There are 2 atac rows with this contig Showing alignment of atac rows: M u H1533 r1132 556286 0 116 1 22 20972552 116 1 M u H1536R r1132 556286 117 69 1 22 20972668 69 1 TAATAAGGACAAGGTCTCACTATGTTGCCCAGGCTGGTCAACTCCTGGACTCAAATGATTCTCCAAACTTGGCCTCTCAAAATGTTGGGATTACAGGTATGAGCCACCATGCCTGGCCTAAAAATAGTATTATATTTTTGTATCATATAATTTTCAATTAGGTAATATGAATATTCTGTACAGGAA |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| TAATAAGGACAAGGTCTCACTATGTTGCCCAGGCTGGTCAACTCCTGGACTCAAATGATTCTCCAAACGTGGCCTCTCAAAATGTTGGGATTACAGGTATGAGCCACCATGCCTGG-CTAAAAATAGTATTATATTTTTGTATCATATAATTTTCAATTAGGTAATATGAATATTCTGTACAGGAA PROCESSING CONTIG 557558. There are 2 atac rows with this contig Showing alignment of atac rows: M u H1556 r1145 557558 0 123 1 22 14541152 123 1 M u H1557 r1145 557558 127 60 1 22 14541280 60 1 Skipping these rows because cgap=4 and rgap=5 PROCESSING CONTIG 563398. There are 2 atac rows with this contig Showing alignment of atac rows: M u H1664 r1215 563398 0 62 1 22 45726835 62 -1 M u H1665R r1215 563398 140 52 1 22 45726744 52 -1 Skipping these rows because cgap=78 and rgap=39 PROCESSING CONTIG 565470. There are 3 atac rows with this contig Showing alignment of atac rows: M u H1709 r1248 565470 1 44 1 22 20987309 44 1 M u H1711R r1248 565470 47 61 1 22 20987354 61 1 Skipping these rows because cgap=2 and rgap=1 Showing alignment of atac rows: M u H1711R r1248 565470 47 61 1 22 20987354 61 1 M u H1713 r1248 565470 111 40 1 22 20987422 40 1 Skipping these rows because cgap=3 and rgap=7 PROCESSING CONTIG 565470. There are 3 atac rows with this contig Showing alignment of atac rows: M u H1709 r1248 565470 1 44 1 22 20987309 44 1 M u H1711R r1248 565470 47 61 1 22 20987354 61 1 Skipping these rows because cgap=2 and rgap=1 Showing alignment of atac rows: M u H1711R r1248 565470 47 61 1 22 20987354 61 1 M u H1713 r1248 565470 111 40 1 22 20987422 40 1 Skipping these rows because cgap=3 and rgap=7 PROCESSING CONTIG 568652. There are 2 atac rows with this contig Showing alignment of atac rows: M u H1768 r1286 568652 1 95 1 22 15245434 95 1 M u H1770 r1286 568652 102 70 1 22 15245530 70 1 Skipping these rows because cgap=6 and rgap=1 PROCESSING CONTIG 570316. There are 2 atac rows with this contig Showing alignment of atac rows: M u H1815 r1314 570316 0 68 1 22 41761304 68 1 M u H1817 r1314 570316 104 77 1 22 41761408 77 1 Skipping these rows because cgap=36 and rgap=36 PROCESSING CONTIG 571616. There are 2 atac rows with this contig Showing alignment of atac rows: M u H1838 r1331 571616 25 58 1 22 39148110 58 -1 M u H1839 r1331 571616 109 91 1 22 39147987 91 -1 Skipping these rows because cgap=26 and rgap=32 PROCESSING CONTIG 573192. There are 2 atac rows with this contig Showing alignment of atac rows: M u H1872 r1351 573192 1 83 1 22 15269748 83 -1 M u H1871 r1351 573192 98 104 1 22 15269641 104 -1 Skipping these rows because cgap=14 and rgap=3 PROCESSING CONTIG 575204. There are 2 atac rows with this contig Showing alignment of atac rows: M u H1913 r1375 575204 0 109 1 22 20983862 109 -1 M u H1912 r1375 575204 110 77 1 22 20983785 77 -1 CACAGGGCCCCAAAGGCCTAGCTGTGGGTTTTCCTGTTTTTACCAGACACCCCCTACCCCGCCACCCAACAGGAAAGGCTCCCCACCTGGCTAGTTCTTTTATCAGCCAGAACAGTTGCACCTCAGCCTAAGAAGTTTCACTTCACCTGTCTGCCAGCCCATGAATTTATTCAAACAAGCCAATTGC |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| CACAGGGCCCCAAAGGCCTAGCCGTGGGTTTTCCTGTTTCTACCAGACACCCCCTACCCTGCCACCCAACAGGAAAGGCTCCCCACCTGGCTAGTTCTTTTATCAGCCA-AACAGTTGCACCTCAGCCTAAGAAGCTTCACTTCACCTGTCTGCCAGCCCATGAATTTATTCAAACAAGCCAACTGC PROCESSING CONTIG 580114. There are 2 atac rows with this contig Showing alignment of atac rows: M u H2028 r1440 580114 18 135 1 22 49576654 135 1 M u H2029 r1440 580114 165 45 1 22 49576800 45 1 Skipping these rows because cgap=12 and rgap=11 PROCESSING CONTIG 581558. There are 2 atac rows with this contig Showing alignment of atac rows: M u H2069 r1461 581558 0 59 1 22 14608365 59 1 M u H2070 r1461 581558 104 107 1 22 14608465 107 1 Skipping these rows because cgap=45 and rgap=41 PROCESSING CONTIG 583170. There are 2 atac rows with this contig Showing alignment of atac rows: M u H2109 r1483 583170 0 57 1 22 28136239 57 -1 M u H2109x1 r1483 583170 85 128 1 22 28136083 128 -1 Skipping these rows because cgap=28 and rgap=28 PROCESSING CONTIG 584836. There are 2 atac rows with this contig Showing alignment of atac rows: M u H2164 r1512 584836 11 88 1 22 49571807 88 -1 M u H2165 r1512 584836 101 115 1 22 49571692 115 -1 TAGAGGAGGAGCTGCTGCTGCAGCCTGTAGCTCCTGGAAGCCCGTTTTGTCCATGATTTAGCAGGAATGCATTACCCTTCCATGAGGAGGCACTGCCCACAGAAACCAAGGCCATTCTTTGAAGACAAACATGTCTTAATAGCCTTTACATTATGTAATAGTGTAATACAAATAATAATTTATTATTAGTAATAATGTGAAATTA |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| TAGAGGAGAAGCTGCTGCTGCAGCCTGTAGCTCCTGCAAGCCCGTTTTGTCCATGATTTAGCAGGAACGCATTACCTTTCCATGAGGA--CACTGCCCACAGAAACCAAGGCCATTCTTTGAAGACAAACATGTCTTAATAGCCTTTACATTATGTAATAGTGTAATACAAATAATAATTTATTATTAGTAATAATGTGAAATTA PROCESSING CONTIG 585270. There are 2 atac rows with this contig Showing alignment of atac rows: M u H2174 r1519 585270 6 85 1 22 15745257 85 -1 M u H2173R r1519 585270 100 116 1 22 15745138 116 -1 Skipping these rows because cgap=9 and rgap=3 PROCESSING CONTIG 586636. There are 2 atac rows with this contig Showing alignment of atac rows: M u H2231 r1548 586636 1 137 1 22 15008388 137 -1 M u H2232 r1548 586636 140 54 1 22 15008331 54 -1 Skipping these rows because cgap=2 and rgap=3 PROCESSING CONTIG 589066. There are 2 atac rows with this contig Showing alignment of atac rows: M u H2289 r1585 589066 0 73 1 22 15752802 73 1 M u H2290R r1585 589066 74 147 1 22 15752875 147 1 AGGACTAATTCATTTAAATATATTAAAATACAAAATAATTCAAACCACTAAAGTGATAATACAAGACTATAAATTTAAAGGCTAATTATTAAGTCAAATTGCTGTATTCTACGTGTTAGAGTGAGTTCAAAAGATCCATTGTATTACTGAATAGGCAAAAGTTTTAATTTCAGAGGATGAAACTGATATATTACTGCCACCTTGTGGATATTCTGTTATTA ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| AGGACTAATTCATTTAAATATATTAAAATACAAAATAATTCAAACCACTAAAGTGATAATACAAGACTATAAA-TTAAAGGCTAATTATTAAGTCAAATTGCTGTATTCTACGTGTTAGAGTGAGTTCAAAAGATCCATTGTATTACTGAATAGGCAAAAGTTTTAATTTCAGAGGATGAAACTGATATATTACTGCCACCTTGTGGATATTCTGTTATTA PROCESSING CONTIG 589640. There are 2 atac rows with this contig Showing alignment of atac rows: M u H2302 r1592 589640 1 125 1 22 14840162 125 1 M u H2303R r1592 589640 129 93 1 22 14840287 93 1 CTTCTGCCAAATGGCCAGAGGCATCTGGGGTGAGGGATGAGCCTACGAGGGCATCATCAGCAAAGAAAGGCTCTCACTTCTGCCATTCCTGAAGCCAGAGCCTGGAGATGTGGGGATGCAGCACAAGAACATCTTGCTCTCTTGAGTGTCTCCCACCAAGTGAGCTGGCTACGCGGCTAACTCTAGGATGTGGGTGCCTGGTTATTGGAATTCTTTTCTTT |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| CTTCTGCCAAATGGCCAGAGGCATCTGGGGTGAGGGATGAGCCTACAAGGGCGTCATCAGCAAAGAAAGGCTCTCACTTCTGCCATTCCTGAAGCCAGAGCCTGGAGATGTGGGGATGCAGCACA---ACATCTTGCTCTCTTGAGTGTCTCCCACCAAGTGAGCTGGCTACGGGGCTAACTCTAGGATGTGGGTGCCTGGTTATTGGAATTCTTTTCTTT PROCESSING CONTIG 591250. There are 2 atac rows with this contig Showing alignment of atac rows: M u H2356 r1622 591250 0 176 1 22 15731866 176 -1 M u H2357 r1622 591250 180 44 1 22 15731819 44 -1 Skipping these rows because cgap=4 and rgap=3 PROCESSING CONTIG 591584. There are 2 atac rows with this contig Showing alignment of atac rows: M u H2369 r1627 591584 0 157 1 22 22130642 157 1 M u H2370 r1627 591584 164 61 1 22 22130799 61 1 AGAAATGAAAGGATTTTCTCAGTGAAAGGTCAGAGTGGTTTCTCTTGTTTTTGTTTAAAAATGGTTTGTGTTGAACTATGACAAGGCCAAATGTACTAAGGCAGCAGAAACAGGGGGAGGGCAGGGGGAGGGCACGGGGACGGCTCCTGAGAAACAGGAGGTGCAGGAACAGGTCAGGTCGCAGGGCCTCTGGGGCAGCACGTGCTCCAAAGGTGGTGAGGGGAG ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| AGAAATGAAAGGATTTTCTCAGTGAAAGGTCAGAGTGGTTTCTCTTGTTTTTGTTTAAAAATGGTTTGTGTTGAACTATGACAAGGCCAAATGTACTAAGGCAGCAGAAACAGGGGGAGGGCAGGGGGAGGGCACGGGGACGGCTCCTGAGAAACAG-------AGGAACAGGTCAGGCCGCAGGGCCTCGGGGGCAGCACGTGCTCCAAAGGTGGTGAGGGGAG PROCESSING CONTIG 595474. There are 2 atac rows with this contig Showing alignment of atac rows: M u H2483 r1692 595474 1 60 1 22 15290017 60 -1 M u H2485 r1692 595474 71 65 1 22 15289944 65 -1 Skipping these rows because cgap=10 and rgap=8 PROCESSING CONTIG 595614. There are 3 atac rows with this contig Showing alignment of atac rows: M u H2490 r1695 595614 1 95 1 22 15562827 95 -1 M u H2489 r1695 595614 106 62 1 22 15562756 62 -1 Skipping these rows because cgap=10 and rgap=9 Showing alignment of atac rows: M u H2489 r1695 595614 106 62 1 22 15562756 62 -1 M u H2492 r1695 595614 178 52 1 22 15562691 52 -1 Skipping these rows because cgap=10 and rgap=13 PROCESSING CONTIG 595614. There are 3 atac rows with this contig Showing alignment of atac rows: M u H2490 r1695 595614 1 95 1 22 15562827 95 -1 M u H2489 r1695 595614 106 62 1 22 15562756 62 -1 Skipping these rows because cgap=10 and rgap=9 Showing alignment of atac rows: M u H2489 r1695 595614 106 62 1 22 15562756 62 -1 M u H2492 r1695 595614 178 52 1 22 15562691 52 -1 Skipping these rows because cgap=10 and rgap=13 PROCESSING CONTIG 597158. There are 2 atac rows with this contig Showing alignment of atac rows: M u H2543 r1724 597158 0 140 1 22 15875483 140 -1 M u H2544 r1724 597158 143 90 1 22 15875389 90 -1 Skipping these rows because cgap=3 and rgap=4 PROCESSING CONTIG 603900. There are 2 atac rows with this contig Showing alignment of atac rows: M u H2705 r1820 603900 1 74 1 22 20988472 74 1 M u H2707 r1820 603900 150 93 1 22 20988604 93 1 Skipping these rows because cgap=75 and rgap=58 PROCESSING CONTIG 604098. There are 3 atac rows with this contig Showing alignment of atac rows: M u H2713 r1824 604098 0 118 1 22 15880208 118 1 M u H2714 r1824 604098 119 81 1 22 15880326 81 1 GGTGTATATCTTATGTTTGAACCCACTCTTCCTGTGGGTTTTGTTTTAAAAGAAATGACTACTATTTTGTCTTCTCCTGTAGCTATTTCTGGACCCTTTGTGGTTTAAGAAGGAATACAGGGAGGAGAAAGAGAAAAAAAATGAAATCATCCAGGCAAGGAAGTTTAGAAAGCAGAGGTTTAGGAGAAGAAAAAGAAGAG |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GGTGTATATCTTATGTTTGAACCCACTCTTCCTGTGGGTTTTGTTTTAAAAGAAATGACTACTATTTTGTCTTCTCCTGTAGCTATTTCTGGACCCTTTGTGGTTTAAGAAGGAATAC-GGGAGGAGAAAGAGAAAAAAAATGAAATCATCCAGGCAAGGAAGTTTAGAAAGCAGAGGTTTAGGAGAAGAAAAAGAAGAG Showing alignment of atac rows: M u H2714 r1824 604098 119 81 1 22 15880326 81 1 M u H2715 r1824 604098 203 40 1 22 15880408 40 1 Skipping these rows because cgap=3 and rgap=1 PROCESSING CONTIG 604098. There are 3 atac rows with this contig Showing alignment of atac rows: M u H2713 r1824 604098 0 118 1 22 15880208 118 1 M u H2714 r1824 604098 119 81 1 22 15880326 81 1 GGTGTATATCTTATGTTTGAACCCACTCTTCCTGTGGGTTTTGTTTTAAAAGAAATGACTACTATTTTGTCTTCTCCTGTAGCTATTTCTGGACCCTTTGTGGTTTAAGAAGGAATACAGGGAGGAGAAAGAGAAAAAAAATGAAATCATCCAGGCAAGGAAGTTTAGAAAGCAGAGGTTTAGGAGAAGAAAAAGAAGAG |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GGTGTATATCTTATGTTTGAACCCACTCTTCCTGTGGGTTTTGTTTTAAAAGAAATGACTACTATTTTGTCTTCTCCTGTAGCTATTTCTGGACCCTTTGTGGTTTAAGAAGGAATAC-GGGAGGAGAAAGAGAAAAAAAATGAAATCATCCAGGCAAGGAAGTTTAGAAAGCAGAGGTTTAGGAGAAGAAAAAGAAGAG Showing alignment of atac rows: M u H2714 r1824 604098 119 81 1 22 15880326 81 1 M u H2715 r1824 604098 203 40 1 22 15880408 40 1 Skipping these rows because cgap=3 and rgap=1 PROCESSING CONTIG 604758. There are 2 atac rows with this contig Showing alignment of atac rows: M u H2740 r1837 604758 0 109 1 22 41761604 109 1 M u H2743 r1837 604758 109 86 1 22 41761716 86 1 TGTGTGGAGGGGAAATGGCCCCCTGCGAGGAAAGTCCTAGCAGCCGGTGGAGCGCAACCAGATGCGGGCCCAGACTGATGGGGTCTCCATGGGAGCCCAGGTGGGAGGT---GGAGGAGAAGGGAGACAGTGAGAAGGTTGTCACCAGGCCCTCACTAATACCCAGGGAGAAGCCCGTGTGCAAAGGAGGTGAAGGAT ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| TGTGTGGAGGGGAAATGGCCCCCTGTGAGGAAAGTCCTAGCAGCTGGTGGAGCGCAACCAGATGCGGGTCCAGACTGATGGGGTCTCCATGGCAGCCCAGGTGGGAGGCGGAGGAGGAGAAGGGAGACAGTGAGAAGGTTGTCACCAGGCCCTCACTAATACCCGGGGAGCAGCCCGTGTGCAAAGGAGGTGAAGGAT PROCESSING CONTIG 604980. There are 2 atac rows with this contig Showing alignment of atac rows: M u H2747 r1839 604980 1 141 1 22 43955896 141 1 M u H2748 r1839 604980 142 103 1 22 43956075 103 1 CTTTTTACTCCAAAAAGTAAGAATCCCCACAACCTGCTGGCGCATGTGTTTTGCAGGCATGGTGGCATGCTTCAGGCTGGAGAATGTCCTCACGGCACTTGACTGAGCTTCCAGTCTCGGGGTCAAGCTTTGCCTGCTCTT--------------------------------------AAATCCAGTTCTAGAAATGTCCTGGTGGGCAGGTCTCACTCTTTTCTGTCACTTTAGCTCTTTTAAAGTGCTTTAGAGACAGGATCTTCCATGATCTTCCCAA |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| CTTTTTACTCCAAAAAGTAAGAATCCCCACAACCTGCTGGCGCATGTGTTTTGCAGGCATGGTGGCATGCTTCAGGCTGGAGAATGTCCTCACGGCACTTGACTGAGCTTCCAGTCTCGGGGTCAAGCTTTGCCTGCTCTCAAGTGGAACAGGAAAGAATTCTTGGCCAGTTTATTTAAAAATCCAGTTCTAGAAATGTCCTGGTGGGCAGGTCTCACTCTTTTCTGTCACTTTAGCTCTTTTAAAGTGCTTTAGAGACAGGATCTTCCATGATCTTCCCAA PROCESSING CONTIG 605270. There are 2 atac rows with this contig Showing alignment of atac rows: M u H2753 r1842 605270 32 122 1 22 15262055 122 -1 M u H2754 r1842 605270 163 82 1 22 15261967 82 -1 Skipping these rows because cgap=9 and rgap=6 PROCESSING CONTIG 609306. There are 2 atac rows with this contig Showing alignment of atac rows: M u H2839 r1896 609306 1 50 1 22 15764409 50 1 M u H2841 r1896 609306 110 134 1 22 15764517 134 1 Skipping these rows because cgap=59 and rgap=58 PROCESSING CONTIG 609532. There are 2 atac rows with this contig Showing alignment of atac rows: M u H2843 r1897 609532 0 107 1 22 49233419 107 1 M u H2843y1R r1897 609532 141 64 1 22 49233560 64 1 Skipping these rows because cgap=34 and rgap=34 PROCESSING CONTIG 611132. There are 2 atac rows with this contig Showing alignment of atac rows: M u H2878 r1916 611132 1 56 1 22 40379523 56 1 M u H2878y1R r1916 611132 110 145 1 22 40379632 145 1 Skipping these rows because cgap=53 and rgap=53 PROCESSING CONTIG 611478. There are 2 atac rows with this contig Showing alignment of atac rows: M u H2885 r1922 611478 0 60 1 22 15876032 60 1 M u H2886 r1922 611478 76 180 1 22 15876094 180 1 Skipping these rows because cgap=16 and rgap=2 PROCESSING CONTIG 612270. There are 2 atac rows with this contig Showing alignment of atac rows: M u H2899 r1930 612270 0 61 1 22 14462175 61 -1 M u H2898 r1930 612270 65 178 1 22 14461992 178 -1 Skipping these rows because cgap=4 and rgap=5 PROCESSING CONTIG 613504. There are 2 atac rows with this contig Showing alignment of atac rows: M u H2926 r1948 613504 0 58 1 22 15764107 58 1 M u H2926x1 r1948 613504 117 142 1 22 15764224 142 1 Skipping these rows because cgap=59 and rgap=59 PROCESSING CONTIG 618430. There are 2 atac rows with this contig Showing alignment of atac rows: M u H3047 r2019 618430 124 64 1 22 14634535 64 -1 M u H3048 r2019 618430 188 40 1 22 14634494 40 -1 CTACTGCTCTACATGATTGTGATCAAAGTCAGATAGCTGAAAGGGACTTCTTTCCAGAGAACAA-ACATGAACAGGTTTATTTACAGGAGAAAATGAATTCTCAT |||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||| CTACTGCTCTACATGATTGTGACCAAAGTCAGAGAGCTGAAAGAGACTTCTTTCCAGAGAACAAGACATGAACAGGTTTATTTACAGAAGACAATGAATTCTCAT PROCESSING CONTIG 623504. There are 3 atac rows with this contig Showing alignment of atac rows: M u H3186 r2099 623504 1 83 1 22 22223460 83 1 M u H3187R r2099 623504 105 50 1 22 22223564 50 1 Skipping these rows because cgap=21 and rgap=21 Showing alignment of atac rows: M u H3187R r2099 623504 105 50 1 22 22223564 50 1 M u H3188 r2099 623504 209 69 1 22 22223645 69 1 Skipping these rows because cgap=54 and rgap=31 PROCESSING CONTIG 623504. There are 3 atac rows with this contig Showing alignment of atac rows: M u H3186 r2099 623504 1 83 1 22 22223460 83 1 M u H3187R r2099 623504 105 50 1 22 22223564 50 1 Skipping these rows because cgap=21 and rgap=21 Showing alignment of atac rows: M u H3187R r2099 623504 105 50 1 22 22223564 50 1 M u H3188 r2099 623504 209 69 1 22 22223645 69 1 Skipping these rows because cgap=54 and rgap=31 PROCESSING CONTIG 625300. There are 2 atac rows with this contig Showing alignment of atac rows: M u H3242 r2127 625300 0 111 1 22 29627993 111 1 M u H3243 r2127 625300 119 124 1 22 29628127 124 1 Skipping these rows because cgap=8 and rgap=23 PROCESSING CONTIG 630426. There are 2 atac rows with this contig Showing alignment of atac rows: M u H3359 r2196 630426 0 87 1 22 15295192 87 1 M u H3360 r2196 630426 87 205 1 22 15295281 205 1 TTGGACTTTCATCTATAGAAAAGAGAAATACATTTATAATTATTTTGGCACATAAATATATTTCAGAAAGTTAAAGTCTCCCTCACC--TTTTTTTTTTCACTTTTTAAGTATTTTAGAGATGGGGTCTTGTTCTGTTGCCCAGGCTGGAGTGTAGTGGCATAATCTTAGCTCACTGTAGCCTTGAACTCCTGGGCTCAAGTGATCCTCTCGCAGTCTCCCAAGTAGAACTACAGGTGTGTACCTCCATGCTGGGCTAATTTTTAAATTGTTTATAGAGACGGGGTCTCGCTAT ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| TTGGACTTTCATCTATAGAAAAGAGAAATACATTTATAATTATTTTGGCACATAAATATATTTCAGAAAGTTAAAGTCTCCCTCACCATTTTTTTTTTTCACTTTTTAAGTATTTTAGAGATGGGGTCTTGCTCTGTTGCCCAGGCTGGAGTGTAGTGGCATAATCATAGCTCACTGTAGCCTTGAACTCCTGGGCTCAAGTGATCCTCTCACAGTCTCCCAAGTAGAACTACAGTTGTGTACCACCATGCTGGGCTAATTTTTAAATTGTTTATAGAGACGGGGTCTCGCTAT PROCESSING CONTIG 632618. There are 3 atac rows with this contig Showing alignment of atac rows: M u H3412 r2226 632618 0 48 1 22 15746167 48 1 M u H3413 r2226 632618 55 158 1 22 15746217 158 1 Skipping these rows because cgap=7 and rgap=2 Showing alignment of atac rows: M u H3413 r2226 632618 55 158 1 22 15746217 158 1 M u H3414 r2226 632618 219 77 1 22 15746380 77 1 Skipping these rows because cgap=6 and rgap=5 PROCESSING CONTIG 632618. There are 3 atac rows with this contig Showing alignment of atac rows: M u H3412 r2226 632618 0 48 1 22 15746167 48 1 M u H3413 r2226 632618 55 158 1 22 15746217 158 1 Skipping these rows because cgap=7 and rgap=2 Showing alignment of atac rows: M u H3413 r2226 632618 55 158 1 22 15746217 158 1 M u H3414 r2226 632618 219 77 1 22 15746380 77 1 Skipping these rows because cgap=6 and rgap=5 PROCESSING CONTIG 633402. There are 2 atac rows with this contig Showing alignment of atac rows: M u H3438 r2241 633402 0 182 1 22 14817988 182 -1 M u H3437 r2241 633402 189 104 1 22 14817875 104 -1 Skipping these rows because cgap=7 and rgap=9 PROCESSING CONTIG 633972. There are 2 atac rows with this contig Showing alignment of atac rows: M u H3454 r2249 633972 0 98 1 22 29631636 98 1 M u H3455 r2249 633972 102 197 1 22 29631736 197 1 Skipping these rows because cgap=4 and rgap=2 PROCESSING CONTIG 635712. There are 2 atac rows with this contig Showing alignment of atac rows: M u H3488 r2271 635712 0 190 1 22 15399788 190 -1 M u H3489 r2271 635712 225 77 1 22 15399679 77 -1 Skipping these rows because cgap=35 and rgap=32 PROCESSING CONTIG 637882. There are 2 atac rows with this contig Showing alignment of atac rows: M u H3541 r2299 637882 0 213 1 22 15061998 213 -1 M u H3543R r2299 637882 213 93 1 22 15061903 93 -1 CTTACAGCAAAAATGAAACAAATGAAAAATAAGCTTCGTGTACTACAGAAGGAACTAACAGAAGCAAAAGAAATAAAATCATAGAGAATCAAAAACTTAAAAGAGAACAAGAGCTCTGCAGTGTGAGGTATGACATACTAGTATATAGGATACTTTTAGTACTAGCTGACTTACCTTCTGAGGTTTAACTAGAGAAAGAAATCTCTGTCTTGT--AGTGTCAAATCCATTTAAATAATACAAGTTATTAACTGTGAATACATCTCCTGATAATTAAATGCATATTTATTTAAATCACAATTTTAATGG ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| CTTACAGCAAAAATGAAACAAATGAAAAATAAGCTTCGTGTACTACAAAATGAACTATCAGAACCAAAAGAAATAAAATCATAGAGAATCAAAAAGTTAAAAGAGAACAAGAGCTCTGCAGTCTGAGGTATGATATACTAGTATATAGGATACTTTTTGTACTAGCTGACTTACCTTCTGAGGTTTAACTGGAGAAAGAAATCTCTGTCTTGTAGAGTGTCAAATTCATTTAAATAATACAAGTTCTTAACTGTGAATACATCTCCTGATAATTAAATACTTATTTATTTAAATCACAATTTTAATGG PROCESSING CONTIG 638010. There are 2 atac rows with this contig Showing alignment of atac rows: M u H3548 r2301 638010 1 120 1 22 34336869 120 -1 M u H3549 r2301 638010 122 185 1 22 34336684 185 -1 TGCTCACCGCCCTGGGTGGCATCCTTAAGAAGAAGGGGCATCATGAGGCAGAGATTAAGCCCCTGGCACAGTCGCATGCCACCAAGCACAAGATCCCCGTGAAGTACCTGGAGGTAGGAGGCAGAGCCTGGGCAGGTGGGAGGATGCGGGGAAGGCCTCGGGTGGGGCAATGGGATCTGGGTTCGAGTCCAAGCTCAGCCACTAACTTGTGGGATGACCTATGCCACTCTTCTCTGTGCCCCAGGTTTCTCATTTGTAAAGGGGACTGCCACCCACTTTGCCTTCCTCCTGGGATTGTTGAGAATG |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| TGCTCACCGCCCTGGGTGGCATCCTTAAGAAGAAGGGGCATCATGAGGCAGAGATTAAGCCCCTGGCACAGTCGCATGCCACCAAGCACAAGATCCCCGTGAAGTACCTGGAGGTAGGAG-CAGAGCCTGGGCAGGTGGGAGGATGCGGGGAAGGCCTCGGGTGGGGCAATGGGATCTGGGTTCGAGTCCAAGCTCAGCCACTAACTTGTGGGATGACCTATGCCACTCTTCTCTGTGCCCCAGGTTTCTCATTTGTAAAGGGGACTGCCACCCACTTTGCCTTCCTCCTGGGATTGTTGAGAATG PROCESSING CONTIG 638788. There are 2 atac rows with this contig Showing alignment of atac rows: M u H3567 r2313 638788 0 47 1 22 29303147 47 -1 M u H3566 r2313 638788 47 261 1 22 29302885 261 -1 GATATAGCTTTGAGTTCTGTGCCCCCCACCCTCCCTTCTACACATAC-TCAGCCTGACCTTCGCCTTCCCCCTCACAGGCCAACAAGCTGGCGGAGAAGCGGAAAGCCCACGATGAGGCGGTGAGGTCTGAGAAGAAGGCCAAGAAGGCAAGGCCGGAGTGAGTGCCTGCGGCCCCTCACAGGGCTGAGGCCAGCCCCTAGCAGCTGGATGTGGCAGAGGCAGGCCAGAGGACCTAAGTGTGATGGACCAGAGTCACTTCTCCTCCTCCTTTCTCCAGCCAGCCCTGACCCCTCATGCTCTCTGGCTGG ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GATATAGCTTTGAGTTCTGTGCCCCCCACCCTCCCTTCTACACATACCTCAGCCTGACCTTCGCCTTCCCCCTCACAGGCCAACAAGCTGGCGGAGAAGCGGAAAGCCCACGATGAGGCGGTGAGGTCTGAGAAGAAGGCCAAGAAGGCAAGGCCGGAGTGAGTGCCTGCGGCCCCTCACAGGGCTGAGGCCAGCCCCTAGCAGCTGGATGTGGCAGAGGCAGGCCAGAGGACCTAAGTGTGATGGACCAGAGTCACTTCTCCTCCTCCTTTCTCCAGCCAGCCCTGACCCCTCATGCTCTCTGGCTGG PROCESSING CONTIG 641364. There are 2 atac rows with this contig Showing alignment of atac rows: M u H3629 r2350 641364 0 105 1 22 15276740 105 -1 M u H3631 r2350 641364 116 197 1 22 15276534 197 -1 Skipping these rows because cgap=11 and rgap=9 PROCESSING CONTIG 641478. There are 3 atac rows with this contig Showing alignment of atac rows: M u H3632 r2351 641478 0 45 1 22 37095771 45 1 M u H3633R r2351 641478 46 65 1 22 37095818 65 1 Skipping these rows because cgap=1 and rgap=2 Showing alignment of atac rows: M u H3633R r2351 641478 46 65 1 22 37095818 65 1 M u H3634 r2351 641478 119 194 1 22 37095887 194 1 Skipping these rows because cgap=8 and rgap=4 PROCESSING CONTIG 641478. There are 3 atac rows with this contig Showing alignment of atac rows: M u H3632 r2351 641478 0 45 1 22 37095771 45 1 M u H3633R r2351 641478 46 65 1 22 37095818 65 1 Skipping these rows because cgap=1 and rgap=2 Showing alignment of atac rows: M u H3633R r2351 641478 46 65 1 22 37095818 65 1 M u H3634 r2351 641478 119 194 1 22 37095887 194 1 Skipping these rows because cgap=8 and rgap=4 PROCESSING CONTIG 644532. There are 2 atac rows with this contig Showing alignment of atac rows: M u H3698 r2394 644532 1 75 1 22 15333358 75 1 M u H3699 r2394 644532 78 41 1 22 15333434 41 1 Skipping these rows because cgap=2 and rgap=1 PROCESSING CONTIG 647672. There are 2 atac rows with this contig Showing alignment of atac rows: M u H3769 r2442 647672 0 61 1 22 21370278 61 1 M u H3769x2 r2442 647672 224 102 1 22 21370502 102 1 Skipping these rows because cgap=163 and rgap=163 PROCESSING CONTIG 649860. There are 2 atac rows with this contig Showing alignment of atac rows: M u H3825 r2474 649860 42 65 1 22 40372934 65 1 M u H3825y1 r2474 649860 131 200 1 22 40373023 200 1 Skipping these rows because cgap=24 and rgap=24 PROCESSING CONTIG 651488. There are 2 atac rows with this contig Showing alignment of atac rows: M u H3865 r2497 651488 1 133 1 22 20976626 133 -1 M u H3866 r2497 651488 195 139 1 22 20976387 139 -1 Skipping these rows because cgap=61 and rgap=100 PROCESSING CONTIG 651532. There are 2 atac rows with this contig Showing alignment of atac rows: M u H3868 r2498 651532 1 42 1 22 39525141 42 -1 M u H3867 r2498 651532 58 276 1 22 39524861 276 -1 Skipping these rows because cgap=15 and rgap=4 PROCESSING CONTIG 655876. There are 2 atac rows with this contig Showing alignment of atac rows: M u H3990 r2557 655876 0 296 1 22 38107474 296 1 M u H3991 r2557 655876 299 43 1 22 38107770 43 1 AGCCTTCCTTCTCCACAGCCAAGCTTGGTCTCATGTTTGGTGCTTTGAGGATCTTTAACCCTCTCCTGCCTGTGTCCTGTGAACTAACCACCACTAACCCAGTGCTCTTGTCTGTCTCTCCCCTAACCACCCCCTCCCGCCTGTCCTTGTCCTCGCCGGCCTTTGTCCCCAGGCGGGCCAGGCTGTGCTGGCCTTCCAGCGGTACCAGATTGGCGCCGACTCGGCCCTCTTCTCCCAGGACTACATGGACCCCAGCCAGGACTCCAGCATGCCTTACGCGCCCTACGTGGAGCCCAACACTGGGCCGGATCCCGCCGGTATGGGCGGCACCTACCAGCAGCC |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| AGCCTTCCTTCTCCACAGCCAAGCTTGGTCTCATGTTTGGTGCTTTGAGGATCTTTAACCCTCTCCTGCCTGTGTCCTGTGAACTAACCACCACTAACCCAGTGCTCTTGTCTGTCTCTCCCCTAACCACCCCCTCCCGCCTGTCCTTGTCCTCGCCGGCCTTTGTCCCCAGGCGGGCCAGGCTGTGCTGGCCTTCCAGCGGTACCAGATTGGCGCCGACTCGGCCCTCTTCTCCCAGGACTACATGGACCCCAGCCAGGACTCCAGCATGCCTTACGCGCCCTACGTGGAGCCCA---CTGGGCCGGATCCCGCCGGTATGGGCGGCACCTACCAGCAGCC PROCESSING CONTIG 659546. There are 2 atac rows with this contig Showing alignment of atac rows: M u H4087 r2608 659546 1 142 1 22 15249268 142 1 M u H4088 r2608 659546 144 205 1 22 15249412 205 1 Skipping these rows because cgap=1 and rgap=2 PROCESSING CONTIG 660906. There are 2 atac rows with this contig Showing alignment of atac rows: M u H4114 r2620 660906 0 232 1 22 20981436 232 1 M u H4118R r2620 660906 241 91 1 22 20981679 91 1 Skipping these rows because cgap=9 and rgap=11 PROCESSING CONTIG 660998. There are 2 atac rows with this contig Showing alignment of atac rows: M u H4125 r2624 660998 1 185 1 22 41762513 185 1 M u H4129 r2624 660998 302 50 1 22 41762812 50 1 Skipping these rows because cgap=116 and rgap=114 PROCESSING CONTIG 661998. There are 2 atac rows with this contig Showing alignment of atac rows: M u H4151y1 r2637 661998 0 150 1 22 40237883 150 -1 M u H4151 r2637 661998 210 144 1 22 40237679 144 -1 Skipping these rows because cgap=60 and rgap=60 PROCESSING CONTIG 663722. There are 2 atac rows with this contig Showing alignment of atac rows: M u H4176 r2652 663722 1 158 1 22 14453305 158 -1 M u H4180 r2652 663722 289 68 1 22 14453132 68 -1 Skipping these rows because cgap=130 and rgap=105 PROCESSING CONTIG 668292. There are 2 atac rows with this contig Showing alignment of atac rows: M u H4249 r2704 668292 0 86 1 22 19470145 86 1 M u H4250 r2704 668292 88 277 1 22 19470236 277 1 Skipping these rows because cgap=2 and rgap=5 PROCESSING CONTIG 671712. There are 2 atac rows with this contig Showing alignment of atac rows: M u H4307 r2745 671712 1 186 1 22 15284791 186 -1 M u H4311R r2745 671712 187 184 1 22 15284606 184 -1 GCTGAGAGTTATTTTTGCTTTTTCCTTTCCACCCAATAAACTCCGTTCCCCCTCACCCTTCAAGTGTTTGCGTGCCTTTTCCTGGTGGTATGACAAGAACCTGGTTTTTTCTGCAACAAAAAGATGTTACCAAAAGCAGATGTATCATGGAATGCTTTATAATCAATAGATTTGTCCAATTTTTTT-ATGAACATGTTGCCCACTCCATTTTTGCGGAGTGATGGATCACACCGAGACCACTTAGTGTGTATTGGCTAGTCTTTTATAACATCAAAATTCATGGGGTCTTAACCACATTCCACATCCTGCGTTTCCCAAGGAGCGCCGGTGATCTGGTTCCTGTAGCCCGGGATAGAGAGGACCGGCCAGC |||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| GCTGAGAGTTATTTTTCCTTTTTCCTTTCCACCCAATAAACTCCATTTCCCCTCACCCTTCAAGTGTTTGCGTGCCTTTTCCTGGTGGTGTGACAAGAACCTGGTTTTTTCTGCAACAAAAAGATGTTACCAGAAGCAGATGTATCATGCAATGCTTTATAATCAATAGATTTGTCCAATTTTTTTAATGAACATGTTGCCCACTCCATTTTTGCGGAGTGATGGATCACACCGAGACCACTTAGTGTGTATTGGCTAGTCTTTTATAACATCAAAATTCATGGGGTCTTAAGCACATTCCACATCCTGCGTTTCCCAAGGAGCGCCGGTGATGTGGTTCCTGTAGCCCGGGATAGAGAAGACTGGCCAGC PROCESSING CONTIG 673392. There are 2 atac rows with this contig Showing alignment of atac rows: M u H4342 r2764 673392 0 144 1 22 29987984 144 1 M u H4342y1 r2764 673392 164 190 1 22 29988148 190 1 Skipping these rows because cgap=20 and rgap=20 PROCESSING CONTIG 673772. There are 2 atac rows with this contig Showing alignment of atac rows: M u H4348y1 r2767 673772 1 68 1 22 36603740 68 -1 M u H4348 r2767 673772 184 190 1 22 36603435 190 -1 Skipping these rows because cgap=115 and rgap=115 PROCESSING CONTIG 682430. There are 2 atac rows with this contig Showing alignment of atac rows: M u H4500 r2874 682430 0 68 1 22 30808904 68 1 M u H4501 r2874 682430 70 318 1 22 30808973 318 1 Skipping these rows because cgap=2 and rgap=1 PROCESSING CONTIG 690374. There are 2 atac rows with this contig Showing alignment of atac rows: M u H4644 r2969 690374 0 192 1 22 40194880 192 1 M u H4644y1 r2969 690374 232 125 1 22 40195112 125 1 Skipping these rows because cgap=40 and rgap=40 PROCESSING CONTIG 692850. There are 2 atac rows with this contig Showing alignment of atac rows: M u H4679 r2995 692850 0 153 1 22 36581365 153 1 M u H4679y1 r2995 692850 230 173 1 22 36581595 173 1 Skipping these rows because cgap=77 and rgap=77 PROCESSING CONTIG 693848. There are 2 atac rows with this contig Showing alignment of atac rows: M u H4700 r3011 693848 1 92 1 22 31143193 92 -1 M u H4701 r3011 693848 109 295 1 22 31142881 295 -1 Skipping these rows because cgap=16 and rgap=17 PROCESSING CONTIG 695672. There are 2 atac rows with this contig Showing alignment of atac rows: M u H4726 r3027 695672 39 190 1 22 24080625 190 1 M u H4727 r3027 695672 239 168 1 22 24080819 168 1 Skipping these rows because cgap=10 and rgap=4 PROCESSING CONTIG 696310. There are 3 atac rows with this contig Showing alignment of atac rows: M u H4742 r3036 696310 14 200 1 22 49575936 200 1 M u H4746 r3036 696310 218 43 1 22 49576138 43 1 Skipping these rows because cgap=4 and rgap=2 Showing alignment of atac rows: M u H4746 r3036 696310 218 43 1 22 49576138 43 1 M u H4747 r3036 696310 272 122 1 22 49576186 122 1 Skipping these rows because cgap=11 and rgap=5 PROCESSING CONTIG 696310. There are 3 atac rows with this contig Showing alignment of atac rows: M u H4742 r3036 696310 14 200 1 22 49575936 200 1 M u H4746 r3036 696310 218 43 1 22 49576138 43 1 Skipping these rows because cgap=4 and rgap=2 Showing alignment of atac rows: M u H4746 r3036 696310 218 43 1 22 49576138 43 1 M u H4747 r3036 696310 272 122 1 22 49576186 122 1 Skipping these rows because cgap=11 and rgap=5 PROCESSING CONTIG 699590. There are 2 atac rows with this contig Showing alignment of atac rows: M u H4808 r3075 699590 1 150 1 22 35932379 150 1 M u H4809 r3075 699590 155 238 1 22 35932532 238 1 Skipping these rows because cgap=4 and rgap=3 PROCESSING CONTIG 701044. There are 2 atac rows with this contig Showing alignment of atac rows: M u H4822y1 r3086 701044 146 87 1 22 49239852 87 -1 M u H4822 r3086 701044 274 140 1 22 49239671 140 -1 Skipping these rows because cgap=41 and rgap=41 PROCESSING CONTIG 702534. There are 2 atac rows with this contig Showing alignment of atac rows: M u H4855 r3105 702534 0 197 1 22 29984969 197 1 M u H4855y1R r3105 702534 215 201 1 22 29985184 201 1 Skipping these rows because cgap=18 and rgap=18 PROCESSING CONTIG 703476. There are 2 atac rows with this contig Showing alignment of atac rows: M u H4874 r3120 703476 1 370 1 22 20950806 370 -1 M u H4876 r3120 703476 371 46 1 22 20950759 46 -1 TTTCCCCATCTCATCACAGATCCAGACCTCCTGAGCCCACTTCCCCATCTCATCACCAGTGATTTCTTGGGCTCTGCATTAGTTTTCTATTGCTGCTGCAACAAACAGCTACAGACTCAGTGGCTTCCATTTCTGTCTTATAGTTCTGGTTGCCAAAAGTCCTAAGAGGATCTCACTGGGCTAAAGTCAAGGTGCTGGTGGGGCTATGTCCCTTCTGGAGGCTCAAGGGATGAATCGGGTCCCTGCCTTTTCTAGCTTCTAGGGGCTCCAGCTTCTAGGTTTGTGGCCTCCTTCCTCCATCCTCAAAGCCAGCAACAGCAGGTGAAGTCCTCGCCCATCGTGCATCACTCTCCCTTCTGCCTCCTTCAAC-TTTTTTTTTTATATTTAGGGGGAACGAGTATAGGATTCTTACATAG |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| TTTCCCCATCTCATCACAGATCCAGACCTCCTGAGCCCACTTCCCCATCTCATCACCAGTGATTTCTTGGGCTCTGCATTAGTTTTCTATTGCTGCTGCAACAAACAGCTACAGACTCAGTGGCTTCCATTTCTGTCTTATAGTTCTGGTTGCCAAAAGTCCTAAGAGGATCTCACTGGGCTAAAGTCAAGGTGCTGGCAGGGCTATGTCCCTTCTGGAGGCTCAAGGGATGAATCGGGTCCCTGCCTTTTCTAGCTTCTAGGGGCTCCAGCTTCTAGGTTTGTGGCCTCCTTCCTCCATCCTCAAAGCCAGCAACAGCAGGTGAAGTCCTCGCCCATCGTGCATCACTCTCCCTTCTGCCTCCTTCAACATTTTTTTTTTATATTTAGGGGGAACGAGTACAGGATTCTTACATAG PROCESSING CONTIG 709220. There are 2 atac rows with this contig Showing alignment of atac rows: M u H4976 r3186 709220 47 208 1 22 15433773 208 -1 M u H4977 r3186 709220 278 100 1 22 15433648 100 -1 Skipping these rows because cgap=23 and rgap=25 PROCESSING CONTIG 710046. There are 2 atac rows with this contig Showing alignment of atac rows: M u H5000 r3204 710046 0 148 1 22 40243327 148 1 M u H5000y1R r3204 710046 223 202 1 22 40243550 202 1 Skipping these rows because cgap=75 and rgap=75 PROCESSING CONTIG 720078. There are 2 atac rows with this contig Showing alignment of atac rows: M u H5183 r3328 720078 1 288 1 22 34917806 288 -1 M u H5184 r3328 720078 313 124 1 22 34917660 124 -1 Skipping these rows because cgap=24 and rgap=22 PROCESSING CONTIG 725552. There are 2 atac rows with this contig Showing alignment of atac rows: M u H5263 r3385 725552 0 157 1 22 25216796 157 1 M u H5264 r3385 725552 166 249 1 22 25216963 249 1 Skipping these rows because cgap=9 and rgap=10 PROCESSING CONTIG 732006. There are 2 atac rows with this contig Showing alignment of atac rows: M u H5347 r3443 732006 0 90 1 22 42867147 90 1 M u H5348R r3443 732006 151 300 1 22 42867267 300 1 Skipping these rows because cgap=61 and rgap=30 PROCESSING CONTIG 734404. There are 2 atac rows with this contig Showing alignment of atac rows: M u H5393 r3479 734404 1 69 1 22 15721027 69 1 M u H5393y2 r3479 734404 311 107 1 22 15721337 107 1 Skipping these rows because cgap=241 and rgap=241 PROCESSING CONTIG 734842. There are 2 atac rows with this contig Showing alignment of atac rows: M u H5405 r3483 734842 1 406 1 22 14870603 406 -1 M u H5406R r3483 734842 409 45 1 22 14870555 45 -1 Skipping these rows because cgap=2 and rgap=3 PROCESSING CONTIG 734870. There are 2 atac rows with this contig Showing alignment of atac rows: M u H5408y1 r3484 734870 1 188 1 22 40244522 188 -1 M u H5408 r3484 734870 284 170 1 22 40244257 170 -1 Skipping these rows because cgap=95 and rgap=95 PROCESSING CONTIG 737464. There are 2 atac rows with this contig Showing alignment of atac rows: M u H5456 r3519 737464 155 53 1 22 16314383 53 -1 M u H5457 r3519 737464 208 249 1 22 16314131 249 -1 TAAAAAGTAAAGTAGAGGTTCCTTTTCAAAGACTTTCCTCCCCATCTAATTAA---GAATAAATAGTAACTTCTCTTAGAAGCAAAATTGATTCAAAGACCCGTGCTAACATTCTTAAATATCTGCCAGCCGTAATAAAGAAATCAATGTACTTTATGTTCTTAGCTCCCACAATTTAGCCTAAATATTTGCCCTGGCATGCTTATACTGGTCCAAGCAAGCATTAGGTCATAGCCTGTTCCTCTTCCTTATTTAAAAGTGTTTTTACCTTTCTCAGCATTCCACAAGTTACTTCCTCCTTCCTT ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| TAAAAAGTAAAGTAGAGGTTCCTCTTCAAAGACTTTCCTCCCCATCTAATTAGGAGGAATAAATAGTAACTTCTCTTAGAAGCAAAATTTATTCAAACACTTGTGCTAACATTCTTAAATATCTGCTAGCCGTAATAAAGAAATCAATGTACTTTATGTTCTTAGCTCCCACAACTTAGCCTAATTATTTGCCCTGGCATGCTTATACTGGTCCAAGCAAGCATTAGGTCATAGCCTGTTCCTCTTCCTTATTTGAAGGTGTTTTTACCTTTCTCAGCATTCCACAAGTTACTTCCTCCTTCCTT PROCESSING CONTIG 743334. There are 2 atac rows with this contig Showing alignment of atac rows: M u H5566 r3587 743334 0 322 1 22 45143523 322 1 M u H5567 r3587 743334 337 127 1 22 45143847 127 1 Skipping these rows because cgap=15 and rgap=2 PROCESSING CONTIG 748958. There are 3 atac rows with this contig Showing alignment of atac rows: M u H5645 r3642 748958 1 48 1 22 41224324 48 1 M u H5646 r3642 748958 206 104 1 22 41224552 104 1 Skipping these rows because cgap=157 and rgap=180 Showing alignment of atac rows: M u H5646 r3642 748958 206 104 1 22 41224552 104 1 M u H5647R r3642 748958 371 99 1 22 41224712 99 1 Skipping these rows because cgap=61 and rgap=56 PROCESSING CONTIG 748958. There are 3 atac rows with this contig Showing alignment of atac rows: M u H5645 r3642 748958 1 48 1 22 41224324 48 1 M u H5646 r3642 748958 206 104 1 22 41224552 104 1 Skipping these rows because cgap=157 and rgap=180 Showing alignment of atac rows: M u H5646 r3642 748958 206 104 1 22 41224552 104 1 M u H5647R r3642 748958 371 99 1 22 41224712 99 1 Skipping these rows because cgap=61 and rgap=56 PROCESSING CONTIG 749902. There are 2 atac rows with this contig Showing alignment of atac rows: M u H5665y2 r3649 749902 0 190 1 22 49233905 190 -1 M u H5665y1 r3649 749902 228 128 1 22 49233739 128 -1 Skipping these rows because cgap=38 and rgap=38 PROCESSING CONTIG 751068. There are 2 atac rows with this contig Showing alignment of atac rows: M u H5687y1 r3663 751068 0 176 1 22 36584694 176 -1 M u H5687 r3663 751068 239 233 1 22 36584398 233 -1 Skipping these rows because cgap=63 and rgap=63 PROCESSING CONTIG 752306. There are 2 atac rows with this contig Showing alignment of atac rows: M u H5702 r3676 752306 0 373 1 22 36783627 373 -1 M u H5703 r3676 752306 408 65 1 22 36783529 65 -1 Skipping these rows because cgap=35 and rgap=33 PROCESSING CONTIG 756410. There are 2 atac rows with this contig Showing alignment of atac rows: M u H5770 r3724 756410 0 380 1 22 30301172 380 -1 M u H5772 r3724 756410 383 64 1 22 30301108 64 -1 TTTTTATACACAATCCCAATTAAACAAAAATTTTAAGACTGTCAACAGAGATAAGGCTGTTTTGAATCGTTTGGCAATTGTTTCCCATGTATCTCATGACTTTCGTTTCACATGCTGCTGAGCTCATGCTGTCCTGGCTGAGGCAATGGACAGCCTGAGTATCTGAAAGGATACAGTGTTTCCAGTGAGTAAAGGCGCGCCGCAGGGCCATCTTCCTGGCCAGTTTCTCCACCTGGGCATGGTGAGCGTACAAGCTCTCCCTCCGCTCCCAGGCCTGCTGCCAGTCACAGAAGTGTATCTGGAGCACAGTGACATGATGGAATCGCTCAGCCATCTCTGCAACAGAGAAATAACTTAAGTGCTACTCCCCTAAGGTTAGAAGATGAGCTGGAAACATCTTTAAGACAAGCTGAACCCCACTACTGGCAGAGAGCAGGGGTTCAAGGC |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| TTTTTATACACAATCCCAATTAAACAAAAATTTTAAGACTGTCAACAGAGATAAGGCTGTTTTGAATCGTTTGGCAATTGTTTCCCATGTATCTCATGACTTTCGTTTCACATGCTGCTGAGCTCATGCTGTCCTGGCTGAGGCAATGGACAGCCTGAGTATCTGAAAGGATACAGTGTTTCCAGTGAGTAAAGGCGCGCCGCAGGGCCATCTTCCTGGCCAGTTTCTCCACCTGGGCATGGTGAGCGTACAAGCTCTCCCTCCGCTCCCAGGCCTGCTGCCAGTCACAGAAGTATATCTGGAGCACAGTGACATGATGGAATCGCTCAGCCATCTCTGCAACAGAGAAATAACTTAAGTGCTACTCCCCTAAGGTTAGA---TGAGCTGGAAACATCTTTAAGACAAGCTGAACCCCACTACTGGCAGAGAGCAGGGGTTCAAGGC PROCESSING CONTIG 760038. There are 2 atac rows with this contig Showing alignment of atac rows: M u H5824y1 r3758 760038 0 235 1 22 40249841 235 -1 M u H5824 r3758 760038 297 185 1 22 40249594 185 -1 Skipping these rows because cgap=62 and rgap=62 PROCESSING CONTIG 761864. There are 2 atac rows with this contig Showing alignment of atac rows: M u H5856 r3778 761864 0 431 1 22 35052353 431 1 M u H5858R r3778 761864 432 52 1 22 35052786 52 1 Skipping these rows because cgap=1 and rgap=2 PROCESSING CONTIG 768964. There are 2 atac rows with this contig Showing alignment of atac rows: M u H5963 r3850 768964 0 65 1 22 16060241 65 1 M u H5965 r3850 768964 124 368 1 22 16060338 368 1 Skipping these rows because cgap=59 and rgap=32 PROCESSING CONTIG 770704. There are 2 atac rows with this contig Showing alignment of atac rows: M u H5992 r3866 770704 0 338 1 22 23483827 338 -1 M u H5991 r3866 770704 354 140 1 22 23483670 140 -1 Skipping these rows because cgap=16 and rgap=17 PROCESSING CONTIG 771680. There are 2 atac rows with this contig Showing alignment of atac rows: M u H6004 r3876 771680 1 310 1 22 40241472 310 1 M u H6004y1 r3876 771680 373 122 1 22 40241844 122 1 Skipping these rows because cgap=62 and rgap=62 PROCESSING CONTIG 773388. There are 2 atac rows with this contig Showing alignment of atac rows: M u H6027 r3893 773388 42 67 1 22 40727090 67 1 M u H6027y1 r3893 773388 158 298 1 22 40727206 298 1 Skipping these rows because cgap=49 and rgap=49 PROCESSING CONTIG 778866. There are 2 atac rows with this contig Showing alignment of atac rows: M u H6121 r3947 778866 0 194 1 22 40252015 194 1 M u H6121y1 r3947 778866 313 190 1 22 40252328 190 1 Skipping these rows because cgap=119 and rgap=119 PROCESSING CONTIG 791292. There are 3 atac rows with this contig Showing alignment of atac rows: M u H6321 r4070 791292 1 83 1 22 15409389 83 -1 M u H6325 r4070 791292 273 55 1 22 15409147 55 -1 Skipping these rows because cgap=189 and rgap=187 Showing alignment of atac rows: M u H6325 r4070 791292 273 55 1 22 15409147 55 -1 M u H6328 r4071 791292 398 120 1 22 20950274 120 1 Skipping because: row1 and row2 have different reference directions PROCESSING CONTIG 791292. There are 3 atac rows with this contig Showing alignment of atac rows: M u H6321 r4070 791292 1 83 1 22 15409389 83 -1 M u H6325 r4070 791292 273 55 1 22 15409147 55 -1 Skipping these rows because cgap=189 and rgap=187 Showing alignment of atac rows: M u H6325 r4070 791292 273 55 1 22 15409147 55 -1 M u H6328 r4071 791292 398 120 1 22 20950274 120 1 Skipping because: row1 and row2 have different reference directions PROCESSING CONTIG 792676. There are 2 atac rows with this contig Showing alignment of atac rows: M u H6350 r4084 792676 0 138 1 22 44126810 138 1 M u H6351R r4084 792676 139 380 1 22 44126948 380 1 GATTTGCTGTGTAAAGTCTAAATTGTTGTAGGCCTAAAACATAATCTGAATTGTCTGGCTGAAGAAGATAGTTTTGTATCTCATTTGCTAAATATTAATAAAGACAATAGTTAATATATCTTCTGTAGGAAGGTCCCCTTGGCTTCTGCCCTGATATGAAAACTGAATAGCTTTTGTGACCTTACCTGTGCACGGCAAACAGGAGAGCCAAGGCTGCCACACACTTTTCTCCCCCTGACAAATTGTCCATTGGCATAAACCGTTTGCCTGGGGCCACACAGTTATAGCTAATTCCCTCCAAGTAAGGTTCTTCAGGGTTCTCTGGGCTAAGAAATGCCTGAAACGCATGTTATTTATTTAGCAATATCAGAAAAGCAACTGATAAAGTTCAACTTGGAGTTTAACTGCAAAATATTCTATTGGTTAGCTTTTCTTCAATTTTGATGGAAAACTACCAATGCCTATAAATAATGTATTTAGTTCTACATGTAATCACAGACAACAGGGTTGTCTGGGTAG |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GATTTGCTGTGTAAAGTCTAAATTGTTGTAGGCCTAAAACATAATCTGAATTGTCTGGCTGAAGAAGATAGTTTTGTATCTCATTTGCTAAATATTAATAAAGACAATAGTTAATATATCTTCTGTAGGAAGGTCCCC-TGGCTTCTGCCCTGATATGAAAACTGAATAGCTTTTGTGACCTTACCTGTGCACAGCAAACAGGAGAGCCAAGGCTGCCACACACTTTTCTCCCCCTGACAAATTGTCCATTGGCATAAACCGTTTGCCTGGGGCCACACAGTTATAGCTAATTCCCTCCAAGTAAGGTTCTTCAGGGTTCTCTGGGCTAAGAAATGCCTGAAACGCATGTTATTTATTTAGCAATATCAGAAAAGCAACTGATAAAGTTCAACTTGGAGTTTAACTGCAAAATATTCTATTGGTTAGCTTTTCTTCAATTTTGATGGAAAACTACCAATGCCTATAAATAATGTATTTAGTTCTACATGTAATCACAGACAACAGGGTTGTCTGGGTAG PROCESSING CONTIG 809280. There are 2 atac rows with this contig Showing alignment of atac rows: M u H6550y3 r4216 809280 0 105 1 22 40727939 105 -1 M u H6550y1 r4216 809280 202 243 1 22 40727599 243 -1 Skipping these rows because cgap=97 and rgap=97 PROCESSING CONTIG 818730. There are 3 atac rows with this contig Showing alignment of atac rows: M u H6649y2 r4293 818730 0 129 1 22 29988762 129 -1 M u H6649y1 r4293 818730 179 73 1 22 29988639 73 -1 Skipping these rows because cgap=50 and rgap=50 Showing alignment of atac rows: M u H6649y1 r4293 818730 179 73 1 22 29988639 73 -1 M u H6649 r4293 818730 310 224 1 22 29988357 224 -1 Skipping these rows because cgap=58 and rgap=58 PROCESSING CONTIG 818730. There are 3 atac rows with this contig Showing alignment of atac rows: M u H6649y2 r4293 818730 0 129 1 22 29988762 129 -1 M u H6649y1 r4293 818730 179 73 1 22 29988639 73 -1 Skipping these rows because cgap=50 and rgap=50 Showing alignment of atac rows: M u H6649y1 r4293 818730 179 73 1 22 29988639 73 -1 M u H6649 r4293 818730 310 224 1 22 29988357 224 -1 Skipping these rows because cgap=58 and rgap=58 PROCESSING CONTIG 830778. There are 2 atac rows with this contig Showing alignment of atac rows: M u H6802 r4402 830778 3 200 1 22 24075898 200 -1 M u H6803 r4402 830778 211 359 1 22 24075535 359 -1 Skipping these rows because cgap=8 and rgap=4 PROCESSING CONTIG 831460. There are 2 atac rows with this contig Showing alignment of atac rows: M u H6818 r4412 831460 0 210 1 22 40225460 210 1 M u H6818y1R r4412 831460 342 229 1 22 40225802 229 1 Skipping these rows because cgap=132 and rgap=132 PROCESSING CONTIG 833406. There are 2 atac rows with this contig Showing alignment of atac rows: M u H6854 r4433 833406 0 317 1 22 29993457 317 1 M u H6854y1 r4433 833406 384 190 1 22 29993841 190 1 Skipping these rows because cgap=67 and rgap=67 PROCESSING CONTIG 833468. There are 2 atac rows with this contig Showing alignment of atac rows: M u H6859 r4436 833468 0 225 1 22 36600096 225 1 M u H6859y3R r4436 833468 367 208 1 22 36600463 208 1 Skipping these rows because cgap=142 and rgap=142 PROCESSING CONTIG 834784. There are 2 atac rows with this contig Showing alignment of atac rows: M u H6885 r4448 834784 0 509 1 22 15768176 509 -1 M u H6888 r4448 834784 513 64 1 22 15768109 64 -1 Skipping these rows because cgap=4 and rgap=3 PROCESSING CONTIG 842124. There are 2 atac rows with this contig Showing alignment of atac rows: M u H6954 r4491 842124 0 167 1 22 30184267 167 1 M u H6955 r4491 842124 172 418 1 22 30184440 418 1 Skipping these rows because cgap=5 and rgap=6 PROCESSING CONTIG 843436. There are 2 atac rows with this contig Showing alignment of atac rows: M u H6964y2 r4498 843436 0 158 1 22 36577443 158 -1 M u H6964 r4498 843436 353 239 1 22 36577009 239 -1 Skipping these rows because cgap=195 and rgap=195 PROCESSING CONTIG 845488. There are 2 atac rows with this contig Showing alignment of atac rows: M u H6999 r4518 845488 0 543 1 22 42317078 543 1 M u H7000 r4518 845488 545 51 1 22 42317621 51 1 AGGAAAAGTTATGCATTTGTCAGGGGGCTTTCTTTTATTGCTTTGGGTAGACTCAAACCCATTCTAATGTAACCCAGCAAACAGGAAGACATGGAGGGTATTTTCATCTCAGAAGGCTGTTTGGGCGGACATACAGAAGAAACAAAGGCAATTCTCCAGTATGTTTTTCAGGGCCATGAGAAACATATTTAACTGAGTCCAAAAAGACCTGTTTAGCAGATGGGTCAGCTCCCCTTCGGTAAGAGAACATCCACATTCTTCCAGCACTTCCTGCATCTTGCATATGGATATGTAGTTGGTTTTGGATTGATCAGTTTTGGTGAATGCTTTGCTGATATCTTGATGGCGGTCCATAAGCTTATCCCTGAAAGAGAGTACATTGCAGACATACCCTAAAATCAGGAAAACAAATAACTCCTTTAAAGCAAACACTGCATGATTATTCTAATGCAATGAGCTGATGGCTCATCTAAGAACTAATTTTGAAGATGTTTTACAGCCTCAGTGTAATACTGACATTAAAAGATATCCCAGAAATATTATAAGTCTGTATCATTATCATTTTCTTATTACCATCATTAGCAAAATTACAACAT ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| AGGAAAAGTTATGCATTTGTCAGGGGGCTTTCTTTTATTGCTTTGGGTAGACTCAAACCCATTCTAATGTAACCCAGCAAACAGGAAGACATGGAGGGTATTTTCATCTCAGAAGGCTGTTTGGGCGGACATACAGAAGAAACAAAGGCAATTCTCCAGTATGTTTTTCAGGGCCATGAGAAACATATTTAACTGAGTCCAAAAAGACCTGTTTAGCAGATGGGTCAGCTCCCCTTCGGTAAGAGAACATCCACATTCTTCCAGCACTTCCTGCATCTTGCATATGGATATGTAGTTGGTTTTGGATTGATCAGTTTTGGTGAATGCTTTGCTGATATCTTGATGGCGGTCCATAAGCTTATCCCTGAAAGAGAGTACATTGCAGACATACCCTAAAATCAGGAAAACAAATAACTCCTTTAAAGCAAACACTGCATGATTATTCTAATGCAATGAGCTGATGGCTCATCTAAGAACTAATTTTGAAGATGTTTTACAGCCTCAGTGTAATACTGACATTAAAAGATATCCCAGAAATATTAT--GTCTGTATCATTATCATTTTCTTATTACCATCATTAGCAAAATTACAACAT PROCESSING CONTIG 848548. There are 2 atac rows with this contig Showing alignment of atac rows: M u H7045 r4543 848548 0 516 1 22 23283491 516 -1 M u H7046R r4543 848548 528 75 1 22 23283405 75 -1 Skipping these rows because cgap=12 and rgap=11 PROCESSING CONTIG 850852. There are 2 atac rows with this contig Showing alignment of atac rows: M u H7080 r4569 850852 0 350 1 22 41854435 350 -1 M u H7081 r4569 850852 352 256 1 22 41854175 256 -1 Skipping these rows because cgap=2 and rgap=4 PROCESSING CONTIG 851876. There are 2 atac rows with this contig Showing alignment of atac rows: M u H7092y1 r4580 851876 0 170 1 22 36596297 170 -1 M u H7092 r4580 851876 342 268 1 22 36595857 268 -1 Skipping these rows because cgap=172 and rgap=172 PROCESSING CONTIG 852782. There are 2 atac rows with this contig Showing alignment of atac rows: M u H7105 r4588 852782 1 43 1 22 15442403 43 -1 M u H7104 r4588 852782 46 566 1 22 15441834 566 -1 Skipping these rows because cgap=2 and rgap=3 PROCESSING CONTIG 854282. There are 2 atac rows with this contig Showing alignment of atac rows: M u H7123 r4599 854282 0 214 1 22 35045934 214 1 M u H7125R r4599 854282 221 395 1 22 35046154 395 1 Skipping these rows because cgap=7 and rgap=6 PROCESSING CONTIG 855060. There are 2 atac rows with this contig Showing alignment of atac rows: M u H7131 r4603 855060 0 214 1 22 40233561 214 1 M u H7131y1 r4603 855060 251 368 1 22 40233812 368 1 Skipping these rows because cgap=37 and rgap=37 PROCESSING CONTIG 855348. There are 3 atac rows with this contig Showing alignment of atac rows: M u H7135 r4605 855348 0 211 1 22 29985676 211 1 M u H7135y1 r4605 855348 258 69 1 22 29985934 69 1 Skipping these rows because cgap=47 and rgap=47 Showing alignment of atac rows: M u H7135y1 r4605 855348 258 69 1 22 29985934 69 1 M u H7135y2 r4605 855348 363 256 1 22 29986039 256 1 Skipping these rows because cgap=36 and rgap=36 PROCESSING CONTIG 855348. There are 3 atac rows with this contig Showing alignment of atac rows: M u H7135 r4605 855348 0 211 1 22 29985676 211 1 M u H7135y1 r4605 855348 258 69 1 22 29985934 69 1 Skipping these rows because cgap=47 and rgap=47 Showing alignment of atac rows: M u H7135y1 r4605 855348 258 69 1 22 29985934 69 1 M u H7135y2 r4605 855348 363 256 1 22 29986039 256 1 Skipping these rows because cgap=36 and rgap=36 PROCESSING CONTIG 855792. There are 2 atac rows with this contig Showing alignment of atac rows: M u H7142y1 r4609 855792 0 216 1 22 29992117 216 -1 M u H7142 r4609 855792 274 346 1 22 29991713 346 -1 Skipping these rows because cgap=58 and rgap=58 PROCESSING CONTIG 856776. There are 3 atac rows with this contig Showing alignment of atac rows: M u H7153 r4618 856776 0 194 1 22 39312880 194 1 M u H7153y1 r4618 856776 245 65 1 22 39313125 65 1 Skipping these rows because cgap=51 and rgap=51 Showing alignment of atac rows: M u H7153y1 r4618 856776 245 65 1 22 39313125 65 1 M u H7153y2 r4618 856776 388 201 1 22 39313268 201 1 Skipping these rows because cgap=78 and rgap=78 PROCESSING CONTIG 856776. There are 3 atac rows with this contig Showing alignment of atac rows: M u H7153 r4618 856776 0 194 1 22 39312880 194 1 M u H7153y1 r4618 856776 245 65 1 22 39313125 65 1 Skipping these rows because cgap=51 and rgap=51 Showing alignment of atac rows: M u H7153y1 r4618 856776 245 65 1 22 39313125 65 1 M u H7153y2 r4618 856776 388 201 1 22 39313268 201 1 Skipping these rows because cgap=78 and rgap=78 PROCESSING CONTIG 858072. There are 2 atac rows with this contig Showing alignment of atac rows: M u H7179 r4634 858072 0 458 1 22 44302207 458 1 M u H7181 r4634 858072 463 164 1 22 44302669 164 1 Skipping these rows because cgap=5 and rgap=4 PROCESSING CONTIG 865532. There are 2 atac rows with this contig Showing alignment of atac rows: M u H7293 r4702 865532 0 304 1 22 37029006 304 -1 M u H7294 r4702 865532 310 343 1 22 37028653 343 -1 Skipping these rows because cgap=6 and rgap=10 PROCESSING CONTIG 867192. There are 2 atac rows with this contig Showing alignment of atac rows: M u H7328 r4717 867192 30 230 1 22 29152922 230 -1 M u H7329R r4717 867192 262 399 1 22 29152522 399 -1 Skipping these rows because cgap=2 and rgap=1 PROCESSING CONTIG 868990. There are 2 atac rows with this contig Showing alignment of atac rows: M u H7354 r4733 868990 1 399 1 22 44337606 399 -1 M u H7354x1 r4733 868990 419 250 1 22 44337337 250 -1 Skipping these rows because cgap=19 and rgap=19 PROCESSING CONTIG 869664. There are 4 atac rows with this contig Showing alignment of atac rows: M u H7359 r4737 869664 0 77 1 22 49232375 77 1 M u H7359y1 r4737 869664 146 146 1 22 49232521 146 1 Skipping these rows because cgap=69 and rgap=69 Showing alignment of atac rows: M u H7359y1 r4737 869664 146 146 1 22 49232521 146 1 M u H7361 r4737 869664 386 78 1 22 49232763 78 1 Skipping these rows because cgap=94 and rgap=96 Showing alignment of atac rows: M u H7361 r4737 869664 386 78 1 22 49232763 78 1 M u H7361y1 r4737 869664 530 143 1 22 49232907 143 1 Skipping these rows because cgap=66 and rgap=66 PROCESSING CONTIG 869664. There are 4 atac rows with this contig Showing alignment of atac rows: M u H7359 r4737 869664 0 77 1 22 49232375 77 1 M u H7359y1 r4737 869664 146 146 1 22 49232521 146 1 Skipping these rows because cgap=69 and rgap=69 Showing alignment of atac rows: M u H7359y1 r4737 869664 146 146 1 22 49232521 146 1 M u H7361 r4737 869664 386 78 1 22 49232763 78 1 Skipping these rows because cgap=94 and rgap=96 Showing alignment of atac rows: M u H7361 r4737 869664 386 78 1 22 49232763 78 1 M u H7361y1 r4737 869664 530 143 1 22 49232907 143 1 Skipping these rows because cgap=66 and rgap=66 PROCESSING CONTIG 869664. There are 4 atac rows with this contig Showing alignment of atac rows: M u H7359 r4737 869664 0 77 1 22 49232375 77 1 M u H7359y1 r4737 869664 146 146 1 22 49232521 146 1 Skipping these rows because cgap=69 and rgap=69 Showing alignment of atac rows: M u H7359y1 r4737 869664 146 146 1 22 49232521 146 1 M u H7361 r4737 869664 386 78 1 22 49232763 78 1 Skipping these rows because cgap=94 and rgap=96 Showing alignment of atac rows: M u H7361 r4737 869664 386 78 1 22 49232763 78 1 M u H7361y1 r4737 869664 530 143 1 22 49232907 143 1 Skipping these rows because cgap=66 and rgap=66 PROCESSING CONTIG 875408. There are 2 atac rows with this contig Showing alignment of atac rows: M u H7446 r4790 875408 121 74 1 22 36556285 74 -1 M u H7444R r4790 875408 344 49 1 22 36556090 49 -1 Skipping these rows because cgap=149 and rgap=146 PROCESSING CONTIG 878378. There are 2 atac rows with this contig Showing alignment of atac rows: M u H7492 r4821 878378 1 89 1 22 36449704 89 -1 M u H7491 r4821 878378 91 639 1 22 36449061 639 -1 Skipping these rows because cgap=1 and rgap=4 PROCESSING CONTIG 879448. There are 3 atac rows with this contig Showing alignment of atac rows: M u H7515 r4829 879448 19 285 1 22 49240085 285 1 M u H7515y1R r4829 879448 369 161 1 22 49240435 161 1 Skipping these rows because cgap=65 and rgap=65 Showing alignment of atac rows: M u H7515y1R r4829 879448 369 161 1 22 49240435 161 1 M u H7515y2 r4829 879448 579 131 1 22 49240645 131 1 Skipping these rows because cgap=49 and rgap=49 PROCESSING CONTIG 879448. There are 3 atac rows with this contig Showing alignment of atac rows: M u H7515 r4829 879448 19 285 1 22 49240085 285 1 M u H7515y1R r4829 879448 369 161 1 22 49240435 161 1 Skipping these rows because cgap=65 and rgap=65 Showing alignment of atac rows: M u H7515y1R r4829 879448 369 161 1 22 49240435 161 1 M u H7515y2 r4829 879448 579 131 1 22 49240645 131 1 Skipping these rows because cgap=49 and rgap=49 PROCESSING CONTIG 881678. There are 3 atac rows with this contig Showing alignment of atac rows: M u H7574y1 r4855 881678 0 221 1 22 36589262 221 -1 M u H7574R r4855 881678 240 169 1 22 36589074 169 -1 Skipping these rows because cgap=19 and rgap=19 Showing alignment of atac rows: M u H7574R r4855 881678 240 169 1 22 36589074 169 -1 M u H7573R r4855 881678 425 335 1 22 36588722 335 -1 Skipping these rows because cgap=16 and rgap=17 PROCESSING CONTIG 881678. There are 3 atac rows with this contig Showing alignment of atac rows: M u H7574y1 r4855 881678 0 221 1 22 36589262 221 -1 M u H7574R r4855 881678 240 169 1 22 36589074 169 -1 Skipping these rows because cgap=19 and rgap=19 Showing alignment of atac rows: M u H7574R r4855 881678 240 169 1 22 36589074 169 -1 M u H7573R r4855 881678 425 335 1 22 36588722 335 -1 Skipping these rows because cgap=16 and rgap=17 PROCESSING CONTIG 884512. There are 3 atac rows with this contig Showing alignment of atac rows: M u H7598 r4870 884512 0 208 1 22 40248612 208 1 M u H7598y1 r4870 884512 285 276 1 22 40248897 276 1 Skipping these rows because cgap=77 and rgap=77 Showing alignment of atac rows: M u H7598y1 r4870 884512 285 276 1 22 40248897 276 1 M u H7598y2 r4870 884512 606 182 1 22 40249218 182 1 Skipping these rows because cgap=45 and rgap=45 PROCESSING CONTIG 884512. There are 3 atac rows with this contig Showing alignment of atac rows: M u H7598 r4870 884512 0 208 1 22 40248612 208 1 M u H7598y1 r4870 884512 285 276 1 22 40248897 276 1 Skipping these rows because cgap=77 and rgap=77 Showing alignment of atac rows: M u H7598y1 r4870 884512 285 276 1 22 40248897 276 1 M u H7598y2 r4870 884512 606 182 1 22 40249218 182 1 Skipping these rows because cgap=45 and rgap=45 PROCESSING CONTIG 885948. There are 2 atac rows with this contig Showing alignment of atac rows: M u H7618y2 r4883 885948 0 128 1 22 40251301 128 -1 M u H7618 r4883 885948 289 515 1 22 40250625 515 -1 Skipping these rows because cgap=161 and rgap=161 PROCESSING CONTIG 889462. There are 2 atac rows with this contig Showing alignment of atac rows: M u H7687 r4907 889462 46 72 1 22 28026090 72 -1 M u H7686 r4907 889462 188 624 1 22 28025326 624 -1 Skipping these rows because cgap=70 and rgap=140 PROCESSING CONTIG 890074. There are 2 atac rows with this contig Showing alignment of atac rows: M u H7701 r4913 890074 1 357 1 22 16278755 357 -1 M u H7700 r4913 890074 385 470 1 22 16278284 470 -1 Skipping these rows because cgap=27 and rgap=1 PROCESSING CONTIG 893238. There are 2 atac rows with this contig Showing alignment of atac rows: M u H7747 r4933 893238 33 673 1 22 15246153 673 -1 M u H7750 r4933 893238 710 191 1 22 15245959 191 -1 Skipping these rows because cgap=4 and rgap=3 PROCESSING CONTIG 893550. There are 4 atac rows with this contig Showing alignment of atac rows: M u H7769y4 r4938 893550 1 59 1 22 28215533 59 -1 M u H7769y3 r4938 893550 225 114 1 22 28215254 114 -1 Skipping these rows because cgap=165 and rgap=165 Showing alignment of atac rows: M u H7769y3 r4938 893550 225 114 1 22 28215254 114 -1 M u H7769y2 r4938 893550 401 66 1 22 28215126 66 -1 Skipping these rows because cgap=62 and rgap=62 Showing alignment of atac rows: M u H7769y2 r4938 893550 401 66 1 22 28215126 66 -1 M u H7769 r4938 893550 726 181 1 22 28214686 181 -1 Skipping these rows because cgap=259 and rgap=259 PROCESSING CONTIG 893550. There are 4 atac rows with this contig Showing alignment of atac rows: M u H7769y4 r4938 893550 1 59 1 22 28215533 59 -1 M u H7769y3 r4938 893550 225 114 1 22 28215254 114 -1 Skipping these rows because cgap=165 and rgap=165 Showing alignment of atac rows: M u H7769y3 r4938 893550 225 114 1 22 28215254 114 -1 M u H7769y2 r4938 893550 401 66 1 22 28215126 66 -1 Skipping these rows because cgap=62 and rgap=62 Showing alignment of atac rows: M u H7769y2 r4938 893550 401 66 1 22 28215126 66 -1 M u H7769 r4938 893550 726 181 1 22 28214686 181 -1 Skipping these rows because cgap=259 and rgap=259 PROCESSING CONTIG 893550. There are 4 atac rows with this contig Showing alignment of atac rows: M u H7769y4 r4938 893550 1 59 1 22 28215533 59 -1 M u H7769y3 r4938 893550 225 114 1 22 28215254 114 -1 Skipping these rows because cgap=165 and rgap=165 Showing alignment of atac rows: M u H7769y3 r4938 893550 225 114 1 22 28215254 114 -1 M u H7769y2 r4938 893550 401 66 1 22 28215126 66 -1 Skipping these rows because cgap=62 and rgap=62 Showing alignment of atac rows: M u H7769y2 r4938 893550 401 66 1 22 28215126 66 -1 M u H7769 r4938 893550 726 181 1 22 28214686 181 -1 Skipping these rows because cgap=259 and rgap=259 PROCESSING CONTIG 895358. There are 2 atac rows with this contig Showing alignment of atac rows: M u H7810 r4958 895358 1 169 1 22 49313086 169 -1 M u H7811 r4958 895358 189 749 1 22 49312314 749 -1 Skipping these rows because cgap=19 and rgap=23 PROCESSING CONTIG 896260. There are 2 atac rows with this contig Showing alignment of atac rows: M u H7824 r4966 896260 0 877 1 22 20472399 877 -1 M u H7825 r4966 896260 887 68 1 22 20472320 68 -1 Skipping these rows because cgap=10 and rgap=11 PROCESSING CONTIG 899234. There are 5 atac rows with this contig Showing alignment of atac rows: M u H7884 r4988 899234 1 181 1 22 33316401 181 1 M u H7884y2 r4988 899234 321 83 1 22 33316721 83 1 Skipping these rows because cgap=139 and rgap=139 Showing alignment of atac rows: M u H7884y2 r4988 899234 321 83 1 22 33316721 83 1 M u H7884y3 r4988 899234 466 70 1 22 33316866 70 1 Skipping these rows because cgap=62 and rgap=62 Showing alignment of atac rows: M u H7884y3 r4988 899234 466 70 1 22 33316866 70 1 M u H7884y4 r4988 899234 560 116 1 22 33316960 116 1 Skipping these rows because cgap=24 and rgap=24 Showing alignment of atac rows: M u H7884y4 r4988 899234 560 116 1 22 33316960 116 1 M u H7884y6 r4988 899234 841 178 1 22 33317241 178 1 Skipping these rows because cgap=165 and rgap=165 PROCESSING CONTIG 899234. There are 5 atac rows with this contig Showing alignment of atac rows: M u H7884 r4988 899234 1 181 1 22 33316401 181 1 M u H7884y2 r4988 899234 321 83 1 22 33316721 83 1 Skipping these rows because cgap=139 and rgap=139 Showing alignment of atac rows: M u H7884y2 r4988 899234 321 83 1 22 33316721 83 1 M u H7884y3 r4988 899234 466 70 1 22 33316866 70 1 Skipping these rows because cgap=62 and rgap=62 Showing alignment of atac rows: M u H7884y3 r4988 899234 466 70 1 22 33316866 70 1 M u H7884y4 r4988 899234 560 116 1 22 33316960 116 1 Skipping these rows because cgap=24 and rgap=24 Showing alignment of atac rows: M u H7884y4 r4988 899234 560 116 1 22 33316960 116 1 M u H7884y6 r4988 899234 841 178 1 22 33317241 178 1 Skipping these rows because cgap=165 and rgap=165 PROCESSING CONTIG 899234. There are 5 atac rows with this contig Showing alignment of atac rows: M u H7884 r4988 899234 1 181 1 22 33316401 181 1 M u H7884y2 r4988 899234 321 83 1 22 33316721 83 1 Skipping these rows because cgap=139 and rgap=139 Showing alignment of atac rows: M u H7884y2 r4988 899234 321 83 1 22 33316721 83 1 M u H7884y3 r4988 899234 466 70 1 22 33316866 70 1 Skipping these rows because cgap=62 and rgap=62 Showing alignment of atac rows: M u H7884y3 r4988 899234 466 70 1 22 33316866 70 1 M u H7884y4 r4988 899234 560 116 1 22 33316960 116 1 Skipping these rows because cgap=24 and rgap=24 Showing alignment of atac rows: M u H7884y4 r4988 899234 560 116 1 22 33316960 116 1 M u H7884y6 r4988 899234 841 178 1 22 33317241 178 1 Skipping these rows because cgap=165 and rgap=165 PROCESSING CONTIG 899234. There are 5 atac rows with this contig Showing alignment of atac rows: M u H7884 r4988 899234 1 181 1 22 33316401 181 1 M u H7884y2 r4988 899234 321 83 1 22 33316721 83 1 Skipping these rows because cgap=139 and rgap=139 Showing alignment of atac rows: M u H7884y2 r4988 899234 321 83 1 22 33316721 83 1 M u H7884y3 r4988 899234 466 70 1 22 33316866 70 1 Skipping these rows because cgap=62 and rgap=62 Showing alignment of atac rows: M u H7884y3 r4988 899234 466 70 1 22 33316866 70 1 M u H7884y4 r4988 899234 560 116 1 22 33316960 116 1 Skipping these rows because cgap=24 and rgap=24 Showing alignment of atac rows: M u H7884y4 r4988 899234 560 116 1 22 33316960 116 1 M u H7884y6 r4988 899234 841 178 1 22 33317241 178 1 Skipping these rows because cgap=165 and rgap=165 PROCESSING CONTIG 899564. There are 2 atac rows with this contig Showing alignment of atac rows: M u H7890 r4990 899564 0 135 1 22 20870214 135 1 M u H7893 r4990 899564 136 893 1 22 20870349 893 1 CCACCATGTGAGCTCGCAGTGAGAAGATGGCAGTCTATGAACCAGTAAGCACATCCTCACCAAACACCGAAGTATCTGCTTGTACTTTGACTTTGGACCTTCCAACTTCCAGAACTAAACTCTGACCTATTTTTTGTTGGACATTTGCATAGTGTGGGCCTCAGAAGGAAGCTGGCTGGAATTTGACATCACAGCCACTAGTAGTCTGTGGGTTGTAATCCCACAGCATAACATGGGGCTTCAGCTGAGCGTAGTGACAGAGGATGGAGTCCACATCCACCCTCTAGCTGCAGACCTGGTGGGCAGAGACAGCACTTAGGCTATGCAGCCCTTCATGGTGGCTTTCTTCAAAGTCATTGTGGTCCATGTGTGCATCACCAGGTCAGCCTCTGGCTGGCGTTGACAGCAGAGTTGTACTCACTTTACCCAGTCCCACTACGTGGCTCAAGTCTCCAGTACTTCAGATTACATCAGCAGCAAATTAAAAACAGCCTGCAGGAAGCATGAGCTATATGTGAGCTTCCAAGACCTGGATGGCAGGACTGGTTCATCGCACCCAAGGGCTATGCTGCTAATTACTGTGATGTAGAATGCTCCTTCCCAATCAATGGACATGTGAATGCAATCAACCATGTGATCATTCAGACCTTGGTTCACCTTATAGATCCTGAATATGTCCCAAAGCTGTGCTGTGTGCCAACTAAACTCAATGCCATTTTGGTTCTTTACTTCAATGACAATTCCAAAATCACCTTGAAAAAAATACAGAAATATGGTTGTAAGAGCTTGTGGATATTGCTAACTTGAAACCAGATGCTGGGGACACACATTCTGCCTTGGATTTCTTGGTCATAGCTGCCTTAAAAAACATACAGAAGCACAGTGGAGGTGGAGGGATAAGACTTTGAAACCATCTCATGCTGATGCCTTACTGCCCGAGAAAAATTTTAACGGACCTTGCTAATAATTTGCTCACTTGGTAAGTAACATGAGTAGTTGTTGGTCTGTACTAAGCTGAGTTTGGTTGTC ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| CCACCATGTGAGCTCGCAGTGAGAAGATGGCAGTCTATGAACCAGTAAGCACATCCTTACCAAACACCGAAGTATCTGCTTGTACTTTGATTTTGGACCTTCCAGCTTCCAGAACTAAACTCTGACCTATTTTTT-TTGGACATTTGCATAGTGTGGGCCTCAGAAGGAAGCTGGCTGGAATTTGACATCACAGCCACTAGTAGTCTGTGGGTTGTAACCCCACAGCATAACATGGGGCTTCAGCTGAGCGTAGTGACAGAGGATGGAGTCCACATCCACCCTCTAGCTGCAGACCTGGTGGGCAGAGACAGCACTTAGGCTATGCAGCCCTTCATGGTGGCTTTCTTCAAAGTCATTGTGGTCCATGTGTGCATCACCAGGTCAGCCTCTGGCTGGCGTTGACAGCAGAGTTGTACTCACTTTACCCAGTCCCACTACGTGGCTCAAGTCTCCAGTACTTCAGATTACATCAGCAGCAAATTAAAAACAGCCTGCAGGAAGCATGAGCTATATGTGAGCTTCCAAGACCTGGATGGCAGGACTGGTTCATCGCACCCAAGGGCTATGCTGCTAATTACTGTGATGTAGAATGCTCCTTCCCAATCAATGGACATGTGAATGCAATCAACCATGTGATCATTCAGACCTTGGTTCACCTTATAGATCCTGAATATGTCCCAAAGCTGTGCTGTGTGCCAACTAAACTCAATGCCATTTTGGTTCTTTACTTCAATGACAATTCCAAAATCACCTTGAAAAAAATACAGAAATATGGTTGTAAGAGCTTGTGGATATTGCTAACTTGAAACCAGATGCTGGGGACACACATTCTGCCTTGGATTCCTTGGTCATAGCTGCCTTAAAAAACATACAGAAGCACAGTGGAGGTGGAGGGATAAGACTTTGAAACCATCTCATGCTGATGCCTTACTGCCCGAGAAAAATTTTAACGGACCTTGCTAATAATTTGCTCACTTGGTAAGTAACATGAGTAGTTGTTGGTCTGTACTAAGCTGAGTTTGGTTGTC PROCESSING CONTIG 899698. There are 4 atac rows with this contig Showing alignment of atac rows: M u H7901y10 r4993 899698 29 156 1 22 30998636 156 -1 M u H7901y8 r4993 899698 284 59 1 22 30998478 59 -1 Skipping these rows because cgap=99 and rgap=99 Showing alignment of atac rows: M u H7901y8 r4993 899698 284 59 1 22 30998478 59 -1 M u H7901y3 r4993 899698 679 86 1 22 30998056 86 -1 Skipping these rows because cgap=336 and rgap=336 Showing alignment of atac rows: M u H7901y3 r4993 899698 679 86 1 22 30998056 86 -1 M u H7901y2R r4993 899698 790 81 1 22 30997950 81 -1 Skipping these rows because cgap=25 and rgap=25 PROCESSING CONTIG 899698. There are 4 atac rows with this contig Showing alignment of atac rows: M u H7901y10 r4993 899698 29 156 1 22 30998636 156 -1 M u H7901y8 r4993 899698 284 59 1 22 30998478 59 -1 Skipping these rows because cgap=99 and rgap=99 Showing alignment of atac rows: M u H7901y8 r4993 899698 284 59 1 22 30998478 59 -1 M u H7901y3 r4993 899698 679 86 1 22 30998056 86 -1 Skipping these rows because cgap=336 and rgap=336 Showing alignment of atac rows: M u H7901y3 r4993 899698 679 86 1 22 30998056 86 -1 M u H7901y2R r4993 899698 790 81 1 22 30997950 81 -1 Skipping these rows because cgap=25 and rgap=25 PROCESSING CONTIG 899698. There are 4 atac rows with this contig Showing alignment of atac rows: M u H7901y10 r4993 899698 29 156 1 22 30998636 156 -1 M u H7901y8 r4993 899698 284 59 1 22 30998478 59 -1 Skipping these rows because cgap=99 and rgap=99 Showing alignment of atac rows: M u H7901y8 r4993 899698 284 59 1 22 30998478 59 -1 M u H7901y3 r4993 899698 679 86 1 22 30998056 86 -1 Skipping these rows because cgap=336 and rgap=336 Showing alignment of atac rows: M u H7901y3 r4993 899698 679 86 1 22 30998056 86 -1 M u H7901y2R r4993 899698 790 81 1 22 30997950 81 -1 Skipping these rows because cgap=25 and rgap=25 PROCESSING CONTIG 900894. There are 2 atac rows with this contig Showing alignment of atac rows: M u H7913 r5000 900894 0 679 1 22 49045701 679 -1 M u H7914 r5000 900894 683 384 1 22 49045315 384 -1 Skipping these rows because cgap=4 and rgap=2 PROCESSING CONTIG 902178. There are 4 atac rows with this contig Showing alignment of atac rows: M u H7916 r5002 902178 1 112 1 22 28215776 112 1 M u H7916y2 r5002 902178 349 149 1 22 28216124 149 1 Skipping these rows because cgap=236 and rgap=236 Showing alignment of atac rows: M u H7916y2 r5002 902178 349 149 1 22 28216124 149 1 M u H7916y3 r5002 902178 693 42 1 22 28216468 42 1 Skipping these rows because cgap=195 and rgap=195 Showing alignment of atac rows: M u H7916y3 r5002 902178 693 42 1 22 28216468 42 1 M u H7916y7R r5002 902178 1063 46 1 22 28216838 46 1 Skipping these rows because cgap=328 and rgap=328 PROCESSING CONTIG 902178. There are 4 atac rows with this contig Showing alignment of atac rows: M u H7916 r5002 902178 1 112 1 22 28215776 112 1 M u H7916y2 r5002 902178 349 149 1 22 28216124 149 1 Skipping these rows because cgap=236 and rgap=236 Showing alignment of atac rows: M u H7916y2 r5002 902178 349 149 1 22 28216124 149 1 M u H7916y3 r5002 902178 693 42 1 22 28216468 42 1 Skipping these rows because cgap=195 and rgap=195 Showing alignment of atac rows: M u H7916y3 r5002 902178 693 42 1 22 28216468 42 1 M u H7916y7R r5002 902178 1063 46 1 22 28216838 46 1 Skipping these rows because cgap=328 and rgap=328 PROCESSING CONTIG 902178. There are 4 atac rows with this contig Showing alignment of atac rows: M u H7916 r5002 902178 1 112 1 22 28215776 112 1 M u H7916y2 r5002 902178 349 149 1 22 28216124 149 1 Skipping these rows because cgap=236 and rgap=236 Showing alignment of atac rows: M u H7916y2 r5002 902178 349 149 1 22 28216124 149 1 M u H7916y3 r5002 902178 693 42 1 22 28216468 42 1 Skipping these rows because cgap=195 and rgap=195 Showing alignment of atac rows: M u H7916y3 r5002 902178 693 42 1 22 28216468 42 1 M u H7916y7R r5002 902178 1063 46 1 22 28216838 46 1 Skipping these rows because cgap=328 and rgap=328 PROCESSING CONTIG 903766. There are 5 atac rows with this contig Showing alignment of atac rows: M u H7952y5 r5005 903766 64 257 1 22 33315887 257 -1 M u H7952y4R r5005 903766 360 118 1 22 33315730 118 -1 Skipping these rows because cgap=39 and rgap=39 Showing alignment of atac rows: M u H7952y4R r5005 903766 360 118 1 22 33315730 118 -1 M u H7952y2 r5005 903766 575 68 1 22 33315565 68 -1 Skipping these rows because cgap=97 and rgap=97 Showing alignment of atac rows: M u H7952y2 r5005 903766 575 68 1 22 33315565 68 -1 M u H7952y1R r5005 903766 684 224 1 22 33315300 224 -1 Skipping these rows because cgap=41 and rgap=41 Showing alignment of atac rows: M u H7952y1R r5005 903766 684 224 1 22 33315300 224 -1 M u H7952 r5005 903766 944 230 1 22 33315034 230 -1 Skipping these rows because cgap=36 and rgap=36 PROCESSING CONTIG 903766. There are 5 atac rows with this contig Showing alignment of atac rows: M u H7952y5 r5005 903766 64 257 1 22 33315887 257 -1 M u H7952y4R r5005 903766 360 118 1 22 33315730 118 -1 Skipping these rows because cgap=39 and rgap=39 Showing alignment of atac rows: M u H7952y4R r5005 903766 360 118 1 22 33315730 118 -1 M u H7952y2 r5005 903766 575 68 1 22 33315565 68 -1 Skipping these rows because cgap=97 and rgap=97 Showing alignment of atac rows: M u H7952y2 r5005 903766 575 68 1 22 33315565 68 -1 M u H7952y1R r5005 903766 684 224 1 22 33315300 224 -1 Skipping these rows because cgap=41 and rgap=41 Showing alignment of atac rows: M u H7952y1R r5005 903766 684 224 1 22 33315300 224 -1 M u H7952 r5005 903766 944 230 1 22 33315034 230 -1 Skipping these rows because cgap=36 and rgap=36 PROCESSING CONTIG 903766. There are 5 atac rows with this contig Showing alignment of atac rows: M u H7952y5 r5005 903766 64 257 1 22 33315887 257 -1 M u H7952y4R r5005 903766 360 118 1 22 33315730 118 -1 Skipping these rows because cgap=39 and rgap=39 Showing alignment of atac rows: M u H7952y4R r5005 903766 360 118 1 22 33315730 118 -1 M u H7952y2 r5005 903766 575 68 1 22 33315565 68 -1 Skipping these rows because cgap=97 and rgap=97 Showing alignment of atac rows: M u H7952y2 r5005 903766 575 68 1 22 33315565 68 -1 M u H7952y1R r5005 903766 684 224 1 22 33315300 224 -1 Skipping these rows because cgap=41 and rgap=41 Showing alignment of atac rows: M u H7952y1R r5005 903766 684 224 1 22 33315300 224 -1 M u H7952 r5005 903766 944 230 1 22 33315034 230 -1 Skipping these rows because cgap=36 and rgap=36 PROCESSING CONTIG 903766. There are 5 atac rows with this contig Showing alignment of atac rows: M u H7952y5 r5005 903766 64 257 1 22 33315887 257 -1 M u H7952y4R r5005 903766 360 118 1 22 33315730 118 -1 Skipping these rows because cgap=39 and rgap=39 Showing alignment of atac rows: M u H7952y4R r5005 903766 360 118 1 22 33315730 118 -1 M u H7952y2 r5005 903766 575 68 1 22 33315565 68 -1 Skipping these rows because cgap=97 and rgap=97 Showing alignment of atac rows: M u H7952y2 r5005 903766 575 68 1 22 33315565 68 -1 M u H7952y1R r5005 903766 684 224 1 22 33315300 224 -1 Skipping these rows because cgap=41 and rgap=41 Showing alignment of atac rows: M u H7952y1R r5005 903766 684 224 1 22 33315300 224 -1 M u H7952 r5005 903766 944 230 1 22 33315034 230 -1 Skipping these rows because cgap=36 and rgap=36 PROCESSING CONTIG 905941. There are 4 atac rows with this contig Showing alignment of atac rows: M u H7991y3 r5007 905941 47 66 1 22 21936567 66 -1 M u H7991y2 r5007 905941 253 47 1 22 21936380 47 -1 Skipping these rows because cgap=140 and rgap=140 Showing alignment of atac rows: M u H7991y2 r5007 905941 253 47 1 22 21936380 47 -1 M u H7991y1 r5007 905941 397 439 1 22 21935844 439 -1 Skipping these rows because cgap=97 and rgap=97 Showing alignment of atac rows: M u H7991y1 r5007 905941 397 439 1 22 21935844 439 -1 M u H7991 r5007 905941 1023 264 1 22 21935393 264 -1 Skipping these rows because cgap=187 and rgap=187 PROCESSING CONTIG 905941. There are 4 atac rows with this contig Showing alignment of atac rows: M u H7991y3 r5007 905941 47 66 1 22 21936567 66 -1 M u H7991y2 r5007 905941 253 47 1 22 21936380 47 -1 Skipping these rows because cgap=140 and rgap=140 Showing alignment of atac rows: M u H7991y2 r5007 905941 253 47 1 22 21936380 47 -1 M u H7991y1 r5007 905941 397 439 1 22 21935844 439 -1 Skipping these rows because cgap=97 and rgap=97 Showing alignment of atac rows: M u H7991y1 r5007 905941 397 439 1 22 21935844 439 -1 M u H7991 r5007 905941 1023 264 1 22 21935393 264 -1 Skipping these rows because cgap=187 and rgap=187 PROCESSING CONTIG 905941. There are 4 atac rows with this contig Showing alignment of atac rows: M u H7991y3 r5007 905941 47 66 1 22 21936567 66 -1 M u H7991y2 r5007 905941 253 47 1 22 21936380 47 -1 Skipping these rows because cgap=140 and rgap=140 Showing alignment of atac rows: M u H7991y2 r5007 905941 253 47 1 22 21936380 47 -1 M u H7991y1 r5007 905941 397 439 1 22 21935844 439 -1 Skipping these rows because cgap=97 and rgap=97 Showing alignment of atac rows: M u H7991y1 r5007 905941 397 439 1 22 21935844 439 -1 M u H7991 r5007 905941 1023 264 1 22 21935393 264 -1 Skipping these rows because cgap=187 and rgap=187 PROCESSING CONTIG 906169. There are 2 atac rows with this contig Showing alignment of atac rows: M u H8028y5 r5009 906169 1 75 1 22 34624348 75 -1 M u H8028y1 r5009 906169 320 714 1 22 34623390 714 -1 Skipping these rows because cgap=244 and rgap=244 PROCESSING CONTIG 907605. There are 4 atac rows with this contig Showing alignment of atac rows: M u H8057y1 r5010 907605 48 132 1 22 49246491 132 1 M u H8058 r5010 907605 180 206 1 22 49246624 206 1 GGAGCTGGTCCACAGGGGTCTGGACGCTGATGCGCTTCTCCTTGGTCAGCGCAGCCACCGGGAAGGAGCGGACCACCACCTGCTCCCCAACTTAGGACAGGCCAGGCAGAGTCAGAAGCAAGGAAGGTAAGC-GGGGGGGGTCCCAGAATCTCAGGGTACCACAGTTATGGGGAATCCCAAGTGGGTGGGGAAGGAGCAGACAAAGGCCCGTTTCCCACGGGCACCCAGAACCCCCGAGAAAAGGGAGAGGGAGGCAGGGAAAGCCCATCCATCCCAAAGACCTGGGGGAGAGGGGGCGACAGGGCCAGAGAGTCTGCAGGCTCACCCAGGGGGTCCGT ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GGAGCTGGTCCACAGGGGTCTGGACGCTGATGCGCTTCTCCTTGGTCAGCGCAGCCACCGGGAAGGAGCGGACCACCACCTGCTCCCCAACTTAGGACAGGCCAGGCAGAGTCAGAAGCAAGGAAGGTAAGGGGGGGGGGGTCCCAGAATCTCAGGGTACCACAGTTATGGGGAATCCCAAGTGGGTGGGGAAGGAGCAGACAAAGGCCCGTTTCCCACGGGCACCCAGAACCCCCGAGAAAAGGGAGAGGGAGGCAGGGAAAGCCCATCCATCCCAAAGACCTGGGGGAGAGGGGGCGACAGGGCCAGAGAGTCTGCAGGCTCACCCAGGGGGTCCGT Showing alignment of atac rows: M u H8058 r5010 907605 180 206 1 22 49246624 206 1 M u H8058y1 r5010 907605 448 52 1 22 49246892 52 1 Skipping these rows because cgap=62 and rgap=62 Showing alignment of atac rows: M u H8058y1 r5010 907605 448 52 1 22 49246892 52 1 M u H8058y2 r5010 907605 539 837 1 22 49246983 837 1 Skipping these rows because cgap=39 and rgap=39 PROCESSING CONTIG 907605. There are 4 atac rows with this contig Showing alignment of atac rows: M u H8057y1 r5010 907605 48 132 1 22 49246491 132 1 M u H8058 r5010 907605 180 206 1 22 49246624 206 1 GGAGCTGGTCCACAGGGGTCTGGACGCTGATGCGCTTCTCCTTGGTCAGCGCAGCCACCGGGAAGGAGCGGACCACCACCTGCTCCCCAACTTAGGACAGGCCAGGCAGAGTCAGAAGCAAGGAAGGTAAGC-GGGGGGGGTCCCAGAATCTCAGGGTACCACAGTTATGGGGAATCCCAAGTGGGTGGGGAAGGAGCAGACAAAGGCCCGTTTCCCACGGGCACCCAGAACCCCCGAGAAAAGGGAGAGGGAGGCAGGGAAAGCCCATCCATCCCAAAGACCTGGGGGAGAGGGGGCGACAGGGCCAGAGAGTCTGCAGGCTCACCCAGGGGGTCCGT ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GGAGCTGGTCCACAGGGGTCTGGACGCTGATGCGCTTCTCCTTGGTCAGCGCAGCCACCGGGAAGGAGCGGACCACCACCTGCTCCCCAACTTAGGACAGGCCAGGCAGAGTCAGAAGCAAGGAAGGTAAGGGGGGGGGGGTCCCAGAATCTCAGGGTACCACAGTTATGGGGAATCCCAAGTGGGTGGGGAAGGAGCAGACAAAGGCCCGTTTCCCACGGGCACCCAGAACCCCCGAGAAAAGGGAGAGGGAGGCAGGGAAAGCCCATCCATCCCAAAGACCTGGGGGAGAGGGGGCGACAGGGCCAGAGAGTCTGCAGGCTCACCCAGGGGGTCCGT Showing alignment of atac rows: M u H8058 r5010 907605 180 206 1 22 49246624 206 1 M u H8058y1 r5010 907605 448 52 1 22 49246892 52 1 Skipping these rows because cgap=62 and rgap=62 Showing alignment of atac rows: M u H8058y1 r5010 907605 448 52 1 22 49246892 52 1 M u H8058y2 r5010 907605 539 837 1 22 49246983 837 1 Skipping these rows because cgap=39 and rgap=39 PROCESSING CONTIG 907605. There are 4 atac rows with this contig Showing alignment of atac rows: M u H8057y1 r5010 907605 48 132 1 22 49246491 132 1 M u H8058 r5010 907605 180 206 1 22 49246624 206 1 GGAGCTGGTCCACAGGGGTCTGGACGCTGATGCGCTTCTCCTTGGTCAGCGCAGCCACCGGGAAGGAGCGGACCACCACCTGCTCCCCAACTTAGGACAGGCCAGGCAGAGTCAGAAGCAAGGAAGGTAAGC-GGGGGGGGTCCCAGAATCTCAGGGTACCACAGTTATGGGGAATCCCAAGTGGGTGGGGAAGGAGCAGACAAAGGCCCGTTTCCCACGGGCACCCAGAACCCCCGAGAAAAGGGAGAGGGAGGCAGGGAAAGCCCATCCATCCCAAAGACCTGGGGGAGAGGGGGCGACAGGGCCAGAGAGTCTGCAGGCTCACCCAGGGGGTCCGT ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GGAGCTGGTCCACAGGGGTCTGGACGCTGATGCGCTTCTCCTTGGTCAGCGCAGCCACCGGGAAGGAGCGGACCACCACCTGCTCCCCAACTTAGGACAGGCCAGGCAGAGTCAGAAGCAAGGAAGGTAAGGGGGGGGGGGTCCCAGAATCTCAGGGTACCACAGTTATGGGGAATCCCAAGTGGGTGGGGAAGGAGCAGACAAAGGCCCGTTTCCCACGGGCACCCAGAACCCCCGAGAAAAGGGAGAGGGAGGCAGGGAAAGCCCATCCATCCCAAAGACCTGGGGGAGAGGGGGCGACAGGGCCAGAGAGTCTGCAGGCTCACCCAGGGGGTCCGT Showing alignment of atac rows: M u H8058 r5010 907605 180 206 1 22 49246624 206 1 M u H8058y1 r5010 907605 448 52 1 22 49246892 52 1 Skipping these rows because cgap=62 and rgap=62 Showing alignment of atac rows: M u H8058y1 r5010 907605 448 52 1 22 49246892 52 1 M u H8058y2 r5010 907605 539 837 1 22 49246983 837 1 Skipping these rows because cgap=39 and rgap=39 PROCESSING CONTIG 907641. There are 3 atac rows with this contig Showing alignment of atac rows: M u H8071y2 r5011 907641 1 792 1 22 17499370 792 -1 M u H8071y1 r5011 907641 881 62 1 22 17499220 62 -1 Skipping these rows because cgap=88 and rgap=88 Showing alignment of atac rows: M u H8071y1 r5011 907641 881 62 1 22 17499220 62 -1 M u H8071R r5011 907641 971 436 1 22 17498756 436 -1 Skipping these rows because cgap=28 and rgap=28 PROCESSING CONTIG 907641. There are 3 atac rows with this contig Showing alignment of atac rows: M u H8071y2 r5011 907641 1 792 1 22 17499370 792 -1 M u H8071y1 r5011 907641 881 62 1 22 17499220 62 -1 Skipping these rows because cgap=88 and rgap=88 Showing alignment of atac rows: M u H8071y1 r5011 907641 881 62 1 22 17499220 62 -1 M u H8071R r5011 907641 971 436 1 22 17498756 436 -1 Skipping these rows because cgap=28 and rgap=28 PROCESSING CONTIG 908089. There are 7 atac rows with this contig Showing alignment of atac rows: M u H8086y6 r5013 908089 1 156 1 22 17544711 156 -1 M u H8086y5 r5013 908089 205 252 1 22 17544411 252 -1 Skipping these rows because cgap=48 and rgap=48 Showing alignment of atac rows: M u H8086y5 r5013 908089 205 252 1 22 17544411 252 -1 M u H8086y4 r5013 908089 487 177 1 22 17544204 177 -1 Skipping these rows because cgap=30 and rgap=30 Showing alignment of atac rows: M u H8086y4 r5013 908089 487 177 1 22 17544204 177 -1 M u H8086y2R r5013 908089 770 88 1 22 17544010 88 -1 Skipping these rows because cgap=106 and rgap=106 Showing alignment of atac rows: M u H8086y2R r5013 908089 770 88 1 22 17544010 88 -1 M u H8086y1 r5013 908089 888 262 1 22 17543718 262 -1 Skipping these rows because cgap=30 and rgap=30 Showing alignment of atac rows: M u H8086y1 r5013 908089 888 262 1 22 17543718 262 -1 M u H8086R r5013 908089 1210 81 1 22 17543577 81 -1 Skipping these rows because cgap=60 and rgap=60 Showing alignment of atac rows: M u H8086R r5013 908089 1210 81 1 22 17543577 81 -1 M u H8090 r5013 908089 1320 133 1 22 17543417 133 -1 Skipping these rows because cgap=29 and rgap=27 PROCESSING CONTIG 908089. There are 7 atac rows with this contig Showing alignment of atac rows: M u H8086y6 r5013 908089 1 156 1 22 17544711 156 -1 M u H8086y5 r5013 908089 205 252 1 22 17544411 252 -1 Skipping these rows because cgap=48 and rgap=48 Showing alignment of atac rows: M u H8086y5 r5013 908089 205 252 1 22 17544411 252 -1 M u H8086y4 r5013 908089 487 177 1 22 17544204 177 -1 Skipping these rows because cgap=30 and rgap=30 Showing alignment of atac rows: M u H8086y4 r5013 908089 487 177 1 22 17544204 177 -1 M u H8086y2R r5013 908089 770 88 1 22 17544010 88 -1 Skipping these rows because cgap=106 and rgap=106 Showing alignment of atac rows: M u H8086y2R r5013 908089 770 88 1 22 17544010 88 -1 M u H8086y1 r5013 908089 888 262 1 22 17543718 262 -1 Skipping these rows because cgap=30 and rgap=30 Showing alignment of atac rows: M u H8086y1 r5013 908089 888 262 1 22 17543718 262 -1 M u H8086R r5013 908089 1210 81 1 22 17543577 81 -1 Skipping these rows because cgap=60 and rgap=60 Showing alignment of atac rows: M u H8086R r5013 908089 1210 81 1 22 17543577 81 -1 M u H8090 r5013 908089 1320 133 1 22 17543417 133 -1 Skipping these rows because cgap=29 and rgap=27 PROCESSING CONTIG 908089. There are 7 atac rows with this contig Showing alignment of atac rows: M u H8086y6 r5013 908089 1 156 1 22 17544711 156 -1 M u H8086y5 r5013 908089 205 252 1 22 17544411 252 -1 Skipping these rows because cgap=48 and rgap=48 Showing alignment of atac rows: M u H8086y5 r5013 908089 205 252 1 22 17544411 252 -1 M u H8086y4 r5013 908089 487 177 1 22 17544204 177 -1 Skipping these rows because cgap=30 and rgap=30 Showing alignment of atac rows: M u H8086y4 r5013 908089 487 177 1 22 17544204 177 -1 M u H8086y2R r5013 908089 770 88 1 22 17544010 88 -1 Skipping these rows because cgap=106 and rgap=106 Showing alignment of atac rows: M u H8086y2R r5013 908089 770 88 1 22 17544010 88 -1 M u H8086y1 r5013 908089 888 262 1 22 17543718 262 -1 Skipping these rows because cgap=30 and rgap=30 Showing alignment of atac rows: M u H8086y1 r5013 908089 888 262 1 22 17543718 262 -1 M u H8086R r5013 908089 1210 81 1 22 17543577 81 -1 Skipping these rows because cgap=60 and rgap=60 Showing alignment of atac rows: M u H8086R r5013 908089 1210 81 1 22 17543577 81 -1 M u H8090 r5013 908089 1320 133 1 22 17543417 133 -1 Skipping these rows because cgap=29 and rgap=27 PROCESSING CONTIG 908089. There are 7 atac rows with this contig Showing alignment of atac rows: M u H8086y6 r5013 908089 1 156 1 22 17544711 156 -1 M u H8086y5 r5013 908089 205 252 1 22 17544411 252 -1 Skipping these rows because cgap=48 and rgap=48 Showing alignment of atac rows: M u H8086y5 r5013 908089 205 252 1 22 17544411 252 -1 M u H8086y4 r5013 908089 487 177 1 22 17544204 177 -1 Skipping these rows because cgap=30 and rgap=30 Showing alignment of atac rows: M u H8086y4 r5013 908089 487 177 1 22 17544204 177 -1 M u H8086y2R r5013 908089 770 88 1 22 17544010 88 -1 Skipping these rows because cgap=106 and rgap=106 Showing alignment of atac rows: M u H8086y2R r5013 908089 770 88 1 22 17544010 88 -1 M u H8086y1 r5013 908089 888 262 1 22 17543718 262 -1 Skipping these rows because cgap=30 and rgap=30 Showing alignment of atac rows: M u H8086y1 r5013 908089 888 262 1 22 17543718 262 -1 M u H8086R r5013 908089 1210 81 1 22 17543577 81 -1 Skipping these rows because cgap=60 and rgap=60 Showing alignment of atac rows: M u H8086R r5013 908089 1210 81 1 22 17543577 81 -1 M u H8090 r5013 908089 1320 133 1 22 17543417 133 -1 Skipping these rows because cgap=29 and rgap=27 PROCESSING CONTIG 908089. There are 7 atac rows with this contig Showing alignment of atac rows: M u H8086y6 r5013 908089 1 156 1 22 17544711 156 -1 M u H8086y5 r5013 908089 205 252 1 22 17544411 252 -1 Skipping these rows because cgap=48 and rgap=48 Showing alignment of atac rows: M u H8086y5 r5013 908089 205 252 1 22 17544411 252 -1 M u H8086y4 r5013 908089 487 177 1 22 17544204 177 -1 Skipping these rows because cgap=30 and rgap=30 Showing alignment of atac rows: M u H8086y4 r5013 908089 487 177 1 22 17544204 177 -1 M u H8086y2R r5013 908089 770 88 1 22 17544010 88 -1 Skipping these rows because cgap=106 and rgap=106 Showing alignment of atac rows: M u H8086y2R r5013 908089 770 88 1 22 17544010 88 -1 M u H8086y1 r5013 908089 888 262 1 22 17543718 262 -1 Skipping these rows because cgap=30 and rgap=30 Showing alignment of atac rows: M u H8086y1 r5013 908089 888 262 1 22 17543718 262 -1 M u H8086R r5013 908089 1210 81 1 22 17543577 81 -1 Skipping these rows because cgap=60 and rgap=60 Showing alignment of atac rows: M u H8086R r5013 908089 1210 81 1 22 17543577 81 -1 M u H8090 r5013 908089 1320 133 1 22 17543417 133 -1 Skipping these rows because cgap=29 and rgap=27 PROCESSING CONTIG 908089. There are 7 atac rows with this contig Showing alignment of atac rows: M u H8086y6 r5013 908089 1 156 1 22 17544711 156 -1 M u H8086y5 r5013 908089 205 252 1 22 17544411 252 -1 Skipping these rows because cgap=48 and rgap=48 Showing alignment of atac rows: M u H8086y5 r5013 908089 205 252 1 22 17544411 252 -1 M u H8086y4 r5013 908089 487 177 1 22 17544204 177 -1 Skipping these rows because cgap=30 and rgap=30 Showing alignment of atac rows: M u H8086y4 r5013 908089 487 177 1 22 17544204 177 -1 M u H8086y2R r5013 908089 770 88 1 22 17544010 88 -1 Skipping these rows because cgap=106 and rgap=106 Showing alignment of atac rows: M u H8086y2R r5013 908089 770 88 1 22 17544010 88 -1 M u H8086y1 r5013 908089 888 262 1 22 17543718 262 -1 Skipping these rows because cgap=30 and rgap=30 Showing alignment of atac rows: M u H8086y1 r5013 908089 888 262 1 22 17543718 262 -1 M u H8086R r5013 908089 1210 81 1 22 17543577 81 -1 Skipping these rows because cgap=60 and rgap=60 Showing alignment of atac rows: M u H8086R r5013 908089 1210 81 1 22 17543577 81 -1 M u H8090 r5013 908089 1320 133 1 22 17543417 133 -1 Skipping these rows because cgap=29 and rgap=27 PROCESSING CONTIG 910709. There are 5 atac rows with this contig Showing alignment of atac rows: M u H8158 r5015 910709 1 232 1 22 36540843 232 1 M u H8158y1 r5015 910709 294 234 1 22 36541136 234 1 Skipping these rows because cgap=61 and rgap=61 Showing alignment of atac rows: M u H8158y1 r5015 910709 294 234 1 22 36541136 234 1 M u H8158y2 r5015 910709 603 166 1 22 36541445 166 1 Skipping these rows because cgap=75 and rgap=75 Showing alignment of atac rows: M u H8158y2 r5015 910709 603 166 1 22 36541445 166 1 M u H8158y4 r5015 910709 897 454 1 22 36541739 454 1 Skipping these rows because cgap=128 and rgap=128 Showing alignment of atac rows: M u H8158y4 r5015 910709 897 454 1 22 36541739 454 1 M u H8158y6 r5015 910709 1433 415 1 22 36542275 415 1 Skipping these rows because cgap=82 and rgap=82 PROCESSING CONTIG 910709. There are 5 atac rows with this contig Showing alignment of atac rows: M u H8158 r5015 910709 1 232 1 22 36540843 232 1 M u H8158y1 r5015 910709 294 234 1 22 36541136 234 1 Skipping these rows because cgap=61 and rgap=61 Showing alignment of atac rows: M u H8158y1 r5015 910709 294 234 1 22 36541136 234 1 M u H8158y2 r5015 910709 603 166 1 22 36541445 166 1 Skipping these rows because cgap=75 and rgap=75 Showing alignment of atac rows: M u H8158y2 r5015 910709 603 166 1 22 36541445 166 1 M u H8158y4 r5015 910709 897 454 1 22 36541739 454 1 Skipping these rows because cgap=128 and rgap=128 Showing alignment of atac rows: M u H8158y4 r5015 910709 897 454 1 22 36541739 454 1 M u H8158y6 r5015 910709 1433 415 1 22 36542275 415 1 Skipping these rows because cgap=82 and rgap=82 PROCESSING CONTIG 910709. There are 5 atac rows with this contig Showing alignment of atac rows: M u H8158 r5015 910709 1 232 1 22 36540843 232 1 M u H8158y1 r5015 910709 294 234 1 22 36541136 234 1 Skipping these rows because cgap=61 and rgap=61 Showing alignment of atac rows: M u H8158y1 r5015 910709 294 234 1 22 36541136 234 1 M u H8158y2 r5015 910709 603 166 1 22 36541445 166 1 Skipping these rows because cgap=75 and rgap=75 Showing alignment of atac rows: M u H8158y2 r5015 910709 603 166 1 22 36541445 166 1 M u H8158y4 r5015 910709 897 454 1 22 36541739 454 1 Skipping these rows because cgap=128 and rgap=128 Showing alignment of atac rows: M u H8158y4 r5015 910709 897 454 1 22 36541739 454 1 M u H8158y6 r5015 910709 1433 415 1 22 36542275 415 1 Skipping these rows because cgap=82 and rgap=82 PROCESSING CONTIG 910709. There are 5 atac rows with this contig Showing alignment of atac rows: M u H8158 r5015 910709 1 232 1 22 36540843 232 1 M u H8158y1 r5015 910709 294 234 1 22 36541136 234 1 Skipping these rows because cgap=61 and rgap=61 Showing alignment of atac rows: M u H8158y1 r5015 910709 294 234 1 22 36541136 234 1 M u H8158y2 r5015 910709 603 166 1 22 36541445 166 1 Skipping these rows because cgap=75 and rgap=75 Showing alignment of atac rows: M u H8158y2 r5015 910709 603 166 1 22 36541445 166 1 M u H8158y4 r5015 910709 897 454 1 22 36541739 454 1 Skipping these rows because cgap=128 and rgap=128 Showing alignment of atac rows: M u H8158y4 r5015 910709 897 454 1 22 36541739 454 1 M u H8158y6 r5015 910709 1433 415 1 22 36542275 415 1 Skipping these rows because cgap=82 and rgap=82