#!/bin/sh
#PBS -q small
#PBS -N terri_atac
#PBS -o stdout.txt
#PBS -e stderr.txt
#PBS -V
#PBS -M terri@sdsc.edu
#PBS -m abe
#PBS -A stsi-group
cd /home/teschwartz/stsi/atac/for_andrew
~/stsi/atac/atacAssembly.py -r ~/stsi/atac/ncbi36 -c data/s_2.contig -i data/s_2.indels -a data/s_2.atac.uids -o s2_output.txt > s2_extra_output.txt