#!/bin/bash #we want to use the default modules on Gordon. source /etc/profile.d/modules.sh module load mrbayes paramfile=$1 THEBINARY=mb echo "CIPRES_THREADSPP=$CIPRES_THREADSPP" echo "CIPRES_NP=$CIPRES_NP" echo "paramfile=$1" echo "running:" echo " mpirun -hostfile $PBS_NODEFILE -np $CIPRES_NP ${THEBINARY} < $paramfile" # Don't allow files greater than 1 gig (specified in 1024 byte blocks) # ulimit -f 1048576 # Don't allow files greater than 8 gig (specified in 1024 byte blocks) ulimit -f 8388608 mpirun -hostfile $PBS_NODEFILE -np $CIPRES_NP ${THEBINARY} < $paramfile