Mark added some new mrbayes tools and wanted to remove some old ones.  While we've
still got the old jobs being processed by checkjobs and loadresults we need them
plus the new tools in the registry that the checkjobs and loadresults daemons with but we don't want 
the old tools in the registry that the web app uses, so: 
	tool-registry.cfg.xml has all the tools and 
	tool-registry.cfg.xml.new just has the new set.   

I'm modifying the build script to build and deploy the sdk-with-dependencies jar that the 
daemons use with the tool-registry.cfg.xml, and then, replace it with tool-registry.cfg.xml.new 
and build the sdk and web app with the new tool set.

When the old jobs are all through the system we can replace
tool-registry.cfg.xml with tool-registry.cfg.xml.new.

If for some reason we need to leave an old tool in the registry, be
sure to create a disabled_resource file for it.


Mon Aug 26 12:51:34 PDT 2013	Terri
	Old mrbayes jobs are finished, copying new registry to standard and
	getting rid of the new one.