#!/bin/bash # Can't run module command (I think it's a bash fn) without sourcing bashrc source $HOME/.bashrc source /etc/profile.d/modules.sh export MODULEPATH=/home/diag/jpg/modulefiles/gordon/applications:$MODULEPATH module load mrbayes paramfile=$1 echo "CIPRES_THREADSPP=$CIPRES_THREADSPP" echo "CIPRES_NP=$CIPRES_NP" echo "paramfile=$1" echo "running:" echo " mpirun -hostfile $PBS_NODEFILE -np $CIPRES_NP mb-mpi < $paramfile" mpirun -hostfile $PBS_NODEFILE -np $CIPRES_NP mb-mpi < $paramfile