# Property is used by: src/main/resources/core/ngbw.cfg.xml tool.registry.home=cipres # ################################################################################### # sge jobs # ################################################################################### # Property is used by: src/main/resources/tool/cipres/tool-registry.cfg.xml: # Change value to CIPRES_CLUSTER to switch all the non-teragrid tools back # to running on cipres cluster. # src/main/resources/tool/cipres/tool-registry.cfg.xml: tool.resource.cluster=TRITON # tool.resource.cluster=CIPRES_CLUSTER triton.host=triton triton.submit=submit.sh triton.check=checkjobs.sh triton.poll=poll.sh triton.project=cipres_test triton.workspace=/home/cipres_test/ngbw/workspace triton.rc=/home/cipres_test/ngbw/contrib/scripts/workbench.rc # Property is used by: src/main/resources/tool/cipres/tool-registry.cfg.xml. # This is the workspace for SGE jobs on CIPRES_CLUSTER # # Directory should be owned by user that runs the web application and it must be on # a filesystem that's shared with the cipres cluster. workspace.cluster=/archive/science/ngbt/portal2prod/workspace/sge_jobs/ # #################################################################################### # non-sge jobs (for RunServiceApp tools: paup, rid3paup, rid3raxml) # directory must be owned by "bwbatch" # #################################################################################### tool.resource.host=SNOOKER host=snooker # Property used by: src/main/resources/tool/cipres/tool-registry.cfg.xml. # This is the workspace for non-SGE jobs and must be owned by bwbatch. workspace=/archive/science/ngbt/portal2prod/workspace/bwbatch_jobs/ # #################################################################################### # GLOBUS Teragrid Properties # Add teragrid.username and teragrid.password to ~/.m2/settings.xml. Username and # password are for the teragrid user portal account. # # grid.globus.dir is set in pom.xml because it is used there. # #################################################################################### # Referenced in tool-registry.xml: teragrid.lonestar.workspace=/home/01205/cipres/ngbw/workspace teragrid.lonestar.project=TG-DEB090011 teragrid.lonestar.host= teragrid.lonestar.user= teragrid.lonestar.login=cipres@lonestar.tacc.utexas.edu teragrid.lonestar.rc=/home/01205/cipres/ngbw/contrib/scripts/workbench.rc teragrid.lonestar.submit=submit.py teragrid.lonestar.check=checkjobs.py teragrid.abe.workspace=/u/ac/cipres/ngbw/workspace teragrid.abe.project=TG-DEB090011 teragrid.abe.host= teragrid.abe.user= teragrid.abe.login=cipres@login-abe.ncsa.teragrid.org teragrid.abe.rc=/u/ac/cipres/ngbw/contrib/scripts/workbench.rc teragrid.abe.submit=submit.py teragrid.abe.check=checkjobs.py # teragrid.trestles.workspace=/phase1/cipres/workspace teragrid.trestles.workspace=/projects/ps-ngbt/backend/trestles_workspace teragrid.trestles.project=TG-DEB090011 teragrid.trestles.host=trestles-dm1.sdsc.edu teragrid.trestles.user= teragrid.trestles.login=cipres@trestles.sdsc.edu teragrid.trestles.rc=/projects/ps-ngbt/home/cipres/.bash_profile teragrid.trestles.submit=submit.py teragrid.trestles.check=checkjobs.py teragrid.trestles.cancel=delete.py teragrid.gordon.workspace=/projects/ps-ngbt/backend/gordon_workspace teragrid.gordon.project=ddp156 teragrid.gordon.host=trestles-dm1.sdsc.edu teragrid.gordon.user= teragrid.gordon.login=cipres@gordon.sdsc.edu teragrid.gordon.rc=/projects/ps-ngbt/home/cipres/.bash_profile teragrid.gordon.submit=gordon_submit.py teragrid.gordon.check=checkjobs.py teragrid.gordon.cancel=delete.py # Set to "true" to disable teragrid tools, "false" to enable teragrid tools. teragrid.tools.disable=false # The rest of the teragrid properties are referenced by globus.properties. # The identity we put in our teragrid security credentials. gridshib.entity.id=www.phylo.org/portal2 gridshib.domain=www.phylo.org # Units for the following are in minutes (1 hr=60, 1 day = 1440, 3 days = 4320, 7 days = 10080, etc) # The longest proxy we can get from myproxy with our current credential is 7 days so # there's no point trying to run jobs longer than that. Lonestar only allows 2 days anyway. # Globus process worker exits after this much time. Should be longer than any job will take. grid.job.lifetime.max = 10080 # Globus process worker polls very frequently the first minute, then at quick.poll.interval for # several minutes and finally at poll.interval. grid.job.poll.interval = 60 grid.job.medium.poll.interval = 5 grid.job.quick.poll.interval = 1 # Lifetime of credential in hours. min.lifetime must be less than lifetime. # With the credential we're using (a default teragrid credential) 7 days = 168 hrs is the max # we can get. grid.myproxy.lifetime = 168 grid.myproxy.min.lifetime = 144 grid.myproxyfile=/tmp/x509_cipres_prod # #################################################################################### # END GLOBUS Teragrid Properties # #################################################################################### # #################################################################################### # Used for sending job completion email # /src/main/resources/tool/[job-html.ftl, job-text.ftl, spring-mail.xml] # #################################################################################### portal.url=http://www.phylo.org/portal2 portal.name=Cipres Portal job.email.from=Cipres Web Portal job.email.enable=true # Triton job submit.sh script calls back to this url to notify us of job completion job.callback.url=http://www.phylo.org/portal2/taskupdate.action # #################################################################################### # Database connection info that will be used in resource filtering of # /src/main/resources/database/database.properties # See Readme.txt for explanation of why database.username and database.password # aren't here. # #################################################################################### # database.url=jdbc:mysql://mysql.sdsc.edu:3312/ngbw # database.url=jdbc:log4jdbc:mysql://mysql.sdsc.edu:3312/ngbw database.url=jdbc:log4jdbc:mysql://mysql.sdsc.edu:3316/cipres database.maxPoolSize=15 database.minPoolSize=3 database.debugUnreturnedConnectionStackTraces=false database.unreturnedConnectionTimeout=0 database.fileRoot=/archive/science/ngbt/db_documents/ngbw_prod database.tempFileRoot=/archive/science/ngbt/db_documents/temp # Property used in src/main/resources/workbench.properties process_worker_command=process_worker_run # Process worker logs are created in $process_worker_logs/finished_logs and # $process_worker_logs/running_logs. process_worker_logs=/fs/portal2prod/logs/ # Poll remote host for completed jobs every 10 minutes checkJobs.poll.seconds=1800 loadResults.poll.seconds=60 loadResults.pool.size=3 disabled.resources.file=/archive/science/ngbt/portal2prod/disabled_resources accounting.period.start=2012-07-01 iplant.charge.number=TG-MCB110022