Selected Sequence(s) Alcohol dehydrogenase 1B (EC 1.1.1.1) (Alcohol dehydrogenase beta subunit) [Homo sapiens (Human)] -------------------------------------------------------------------------------- [ Download Unformatted Results ] Alcohol dehydrogenase 1B (EC 1.1.1.1) (Alcohol dehydrogenase beta subunit) [Homo sapiens (Human)] Database chosen: /misc/workbench/DB/CDD/Pfam -------------------------------------------------------------------------------- 2 profiles matched -------------------------------------------------------------------------------- RPS-BLAST 2.2.12 [Aug-07-2005] Database: Pfam.v.11.0 9318 sequences; 1,769,994 total letters Searching Query= ADH1B_HUMAN (374 letters) Domains producing significant alignments: Click on the CDD ID to view the NCBI Conserved Domain database entry Database ID CDD ID Description Score (bits) E value pfam00107 84524 ADH_zinc_N, Zinc-binding dehydrogenase.. 104 1e-23 pfam08240 87467 ADH_N, Alcohol dehydrogenase GroES-like... 98 8e-22 -------------------------------------------------------------------------------- >gnl|CDD|84524 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.. Length = 142 Score = 104 bits (260), Expect = 1e-23 Identities = 55/145 (37%), Positives = 76/145 (52%), Gaps = 5/145 (3%) Query: 191 PGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPI 250 PG T V G GGVGL+AV KA GAAR+IAVD +++K AKELGA IN +D + Sbjct: 1 PGDTVLVHGAGGVGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYRD--EDF 58 Query: 251 QEVLKEMTDG-GVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNLSINPMLLL 309 E ++E+T G GVD + +G T+ +L G V+VG+P + LLL Sbjct: 59 VERVRELTGGRGVDVVIDCVGAPATLEQALELLRPG-GRVVVVGLPGGAPVPFPLRDLLL 117 Query: 310 TGRTWKG-AVYGGFKSKEGIPKLVA 333 T G G + +E + L + Sbjct: 118 KELTILGSLGGGREEFEEALELLAS 142 >gnl|CDD|87467 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain. This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure.. Length = 108 Score = 98.0 bits (244), Expect = 8e-22 Identities = 44/127 (34%), Positives = 59/127 (46%), Gaps = 22/127 (17%) Query: 35 EVRIKMVAVGICRTDDHVVSG-NLVTPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLF 93 EV +++ A GIC +D H+ G LP+ILGHE AGIVE VG GVT +K GD+V+ Sbjct: 3 EVLVRVKAAGICGSDLHIYRGGPPPVKLPLILGHEGAGIVEEVGPGVTGLKVGDRVVVYP 62 Query: 94 TPQCGKCRVCKNPESNYCLKNDLGNPRGTLQDGTRRFTCRGKPIHHFLGTSTFSQYTVVD 153 CGKC C+ N C G +DG F++Y VV Sbjct: 63 LIPCGKCAACREGRENLCPNGKFL---GVDRDG------------------GFAEYVVVP 101 Query: 154 ENAVAKI 160 + + Sbjct: 102 ARNLVPL 108 Database: Pfam.v.11.0 Posted date: Nov 8, 2007 6:22 PM Number of letters in database: 1,769,994 Number of sequences in database: 9318 Lambda K H 0.320 0.137 0.416 Gapped Lambda K H 0.267 0.0613 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9318 Number of Hits to DB: 2,179,765 Number of extensions: 158665 Number of successful extensions: 186 Number of sequences better than 1.0e-02: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's gapped: 183 Number of HSP's successfully gapped: 2 Length of query: 374 Length of database: 1,769,994 Length adjustment: 85 Effective length of query: 289 Effective length of database: 977,964 Effective search space: 282631596 Effective search space used: 282631596 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 6.9 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 7900 (3047.1 bits)