# Property is used by: src/main/resources/core/ngbw.cfg.xml tool.registry.home=cipres # ################################################################################### # sge jobs # ################################################################################### # Property is used by: src/main/resources/tool/cipres/tool-registry.cfg.xml: tool.resource.cluster=CIPRES_CLUSTER # Property is used by: src/main/resources/tool/cipres/tool-registry.cfg.xml. # This is the workspace for SGE jobs on CIPRES_CLUSTER # # Directory should be owned by user that runs the web application and it must be on # a filesystem that's shared with the cipres cluster. Create your own directory # and set that value here!!! # Terri uses this value for her development testing (on 8ball) of sge cluster tools workspace.cluster=/projects/cipres/terri/ngbw/test_workspace/ # #################################################################################### # non-sge jobs (for RunServiceApp tools: paup, rid3paup, rid3raxml) # directory must be owned by "bwbatch" # #################################################################################### tool.resource.host=8BALL host=8ball # Property used by: src/main/resources/tool/cipres/tool-registry.cfg.xml. # This is the workspace for non-SGE jobs and must be owned by bwbatch. PLEASE CREATE YOUR OWN # DIRECTORY FOR TESTING so that OUR JOBS AREN'T INTERMINGLED. # Terri uses this value for her development testing on 8ball of non-sge tools workspace=/fs/swami-ws/ # #################################################################################### # Teragrid Resources # if using, add , , and # to ~/.m2/settings.xml and set teragrid.tools.disable=false below # #################################################################################### tool.resource.abe=ABE abe.workspace= tool.resource.lonestar=LONESTAR # lonestar.workspace=/home/sy/ux429575/ngbw/workspace lonestar.workspace=/home/01143/tg804218/ngbw/workspace lonestar.rc=/home/01143/tg804218/ngbw/contrib/scripts/ngbw.rc # This property is used in tool-registry-cfg.xml. Set to "true" to disable teragrid tools, # "false" to enable teragrid tools. teragrid.tools.disable=false teragrid.lonestar.workspace=/home/01143/tg804218/ngbw/workspace teragrid.lonestar.wrapper=/home/01143/tg804218/ngbw/contrib/tools/bin/wrap.sh # #################################################################################### # Used for sending job completion email # Properties are used in: /src/main/resources/tool/[job-html.ftl, job-text.ftl, spring-mail.xml] # #################################################################################### portal.url=http://localhost/portal2 portal.name=Cipres Portal Dev job.email.from=Cipres Web Portal job.email.enable=true # #################################################################################### # Database connection info that will be used in resource filtering of # /src/main/resources/database/database.properties # See Readme.txt for explanation of why database.username and database.password # aren't here. # #################################################################################### database.url=jdbc:mysql://mysql.sdsc.edu:3312/ngbwtest database.maxPoolSize=5 database.minPoolSize=1 database.debugUnreturnedConnectionStackTraces=true database.unreturnedConnectionTimeout=120 # Property used in src/main/resources/workbench.properties process_worker_command=process_worker_run # Process worker logs are created in $process_worker_logs/finished_logs and # $process_worker_logs/running_logs. process_worker_logs=/tmp