// GenbankParser.hpp


#if !defined(GENBANK_PARSER_HPP)
#define GENBANK_PARSER_HPP


#include <string>
#include <vector>
#include "Parser.hpp"
#include "Reader.hpp"


namespace NGBW {


struct GenbankRecord {
	typedef std::vector<std::string> VersionList;

	void clear() throw()
	{
		locus.clear();
		definition.clear();
		accession.clear();
		organism.clear();
		sequence.clear();
		version.clear();
	}

	std::string locus;
	std::string definition;
	std::string accession;
	std::string organism;
	std::string sequence;
	VersionList version;
};


class GenbankParser : public Parser {
public:

	GenbankParser(Reader &input) throw() : Parser(input) { }
	~GenbankParser() throw() { }


	bool Parse(GenbankRecord &record);


private:

	void ParseLocus(GenbankRecord &record);
	void ParseDefinition(GenbankRecord &record);
	void ParseAccession(GenbankRecord &record);
	void ParseVersion(GenbankRecord &record);
	void ParseSource(GenbankRecord &record);
	void ParseOrigin(GenbankRecord &record);
	void IgnoreField();
	bool FindEndToken();
};


} // namespace NGBW


#endif // GENBANK_PARSER_HPP