#!/bin/sh
# This lets you run sdk classes from the command line.  For example
#	sdkrun org.ngbw.examples.ToolTest RAXML GARLI
#
# You can set system properties or other java options by passing them prior
# to the classname.
#
# This file needs to be kept in synch with the classpath info in eclipse.classpath
# or pom.xml.

M2_REPO=~/.m2/repository
WP_CP= 
WP_CP=$M2_REPO/org/ngbw/passwords/2.0/passwords-2.0.jar
WP_CP=${WP_CP}:$M2_REPO/org/ngbw/sdk/1.3-SNAPSHOT/sdk-1.3-SNAPSHOT.jar
WP_CP=${WP_CP}:$M2_REPO/asm/asm-attrs/1.5.3/asm-attrs-1.5.3.jar
WP_CP=${WP_CP}:$M2_REPO/junit/junit/4.2/junit-4.2.jar
WP_CP=${WP_CP}:$M2_REPO/javax/xml/bind/jaxb-api/2.1/jaxb-api-2.1.jar
WP_CP=${WP_CP}:$M2_REPO/cglib/cglib/2.1_3/cglib-2.1_3.jar
WP_CP=${WP_CP}:$M2_REPO/javax/xml/stream/jsr173/1.0/jsr173-1.0.jar
WP_CP=${WP_CP}:$M2_REPO/net/sf/ehcache/ehcache/1.2.3/ehcache-1.2.3.jar
WP_CP=${WP_CP}:$M2_REPO/javax/transaction/jta/1.0.1B/jta-1.0.1B.jar
WP_CP=${WP_CP}:$M2_REPO/javax/persistence/persistence-api/1.0/persistence-api-1.0.jar
WP_CP=${WP_CP}:$M2_REPO/c3p0/c3p0/0.9.1.2/c3p0-0.9.1.2.jar
WP_CP=${WP_CP}:$M2_REPO/javax/xml/bind/jaxb-xjc/2.1.2/jaxb-xjc-2.1.2.jar
WP_CP=${WP_CP}:$M2_REPO/dom4j/dom4j/1.6.1/dom4j-1.6.1.jar
WP_CP=${WP_CP}:$M2_REPO/log4j/log4j/1.2.14/log4j-1.2.14.jar
WP_CP=${WP_CP}:$M2_REPO/javax/servlet/servlet-api/2.3/servlet-api-2.3.jar
WP_CP=${WP_CP}:$M2_REPO/commons-beanutils/commons-beanutils/1.7.0/commons-beanutils-1.7.0.jar
WP_CP=${WP_CP}:$M2_REPO/mysql/mysql-connector-java/5.1.5/mysql-connector-java-5.1.5.jar
WP_CP=${WP_CP}:$M2_REPO/commons-collections/commons-collections/2.1.1/commons-collections-2.1.1.jar
WP_CP=${WP_CP}:$M2_REPO/commons-logging/commons-logging/1.1/commons-logging-1.1.jar
WP_CP=${WP_CP}:$M2_REPO/logkit/logkit/1.0.1/logkit-1.0.1.jar
WP_CP=${WP_CP}:$M2_REPO/commons-net/commons-net/1.4.1/commons-net-1.4.1.jar
WP_CP=${WP_CP}:$M2_REPO/asm/asm/1.5.3/asm-1.5.3.jar
WP_CP=${WP_CP}:$M2_REPO/javax/xml/bind/jaxb-impl/2.1/jaxb-impl-2.1.jar
WP_CP=${WP_CP}:$M2_REPO/oro/oro/2.0.8/oro-2.0.8.jar
WP_CP=${WP_CP}:$M2_REPO/avalon-framework/avalon-framework/4.1.3/avalon-framework-4.1.3.jar
WP_CP=${WP_CP}:$M2_REPO/antlr/antlr/2.7.6/antlr-2.7.6.jar
WP_CP=${WP_CP}:$M2_REPO/javax/activation/activation/1.0.2/activation-1.0.2.jar
WP_CP=${WP_CP}:$M2_REPO/com/trilead/trilead-ssh2/211/trilead-ssh2-211.jar
WP_CP=${WP_CP}:$M2_REPO/org/apache/lucene/lucene-core/2.2.0/lucene-core-2.2.0.jar
WP_CP=${WP_CP}:$M2_REPO/org/ggf/drmaa/0.5/drmaa-0.5.jar

java -ea -Xms1024m -Xmx2048m -cp $WP_CP $*