BLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|22212485|lcl|AB064910.1|AB064910 Human intestinal firmicute CB47 gene for 16S rRNA, partial sequence. (499 letters) Database: GBROD 314,789 sequences; 4,040,814,338 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|67514186 Mus musculus (house mouse). Mus musculus chromosome... 42 0.40 gi|63147532 INFORMATION:. Mus musculus BAC clone RP23-340N4 fro... 42 0.40 gi|47825181 INFORMATION:. Mus musculus BAC clone RP23-181J14 fr... 40 1.6 gi|23462926 INFORMATION:. Mus musculus BAC clone RP24-397F8 fro... 40 1.6 gi|56787830 INFORMATION:. Mus musculus BAC clone RP24-426J4 fro... 40 1.6 gi|37806563 INFORMATION:. Mus musculus BAC clone RP23-197G20 fr... 40 1.6 gi|49659387 Mus musculus (house mouse). Mouse DNA sequence from... 40 1.6 gi|68532109 Mus musculus (house mouse). Mus musculus 6 BAC RP23... 40 1.6 gi|62000733 Mus musculus (house mouse). Mus musculus 6 BAC RP24... 40 1.6 gi|34494975 INFORMATION:. Mus musculus BAC clone RP24-183I4 fro... 38 6.3 gi|50540839 Mus musculus (house mouse). Mus musculus chromosome... 38 6.3 gi|22213503 INFORMATION:. Mus musculus BAC clone RP23-68E10 fro... 38 6.3 gi|84580039 Mus musculus (house mouse). Mus musculus chromosome... 38 6.3 gi|29367461 Mus musculus (house mouse). Mouse DNA sequence from... 38 6.3 >gi|67514186 Mus musculus (house mouse). Mus musculus chromosome 5, clone RP23-324H16, complete sequence. Length = 202586 Score = 42.1 bits (21), Expect = 0.40 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 aacctgcctcaaagaggggga 138 ||||||||||||||||||||| Sbjct: 193647 aacctgcctcaaagaggggga 193627 >gi|63147532 INFORMATION:. Mus musculus BAC clone RP23-340N4 from chromosome 5, complete Length = 186413 Score = 42.1 bits (21), Expect = 0.40 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 aacctgcctcaaagaggggga 138 ||||||||||||||||||||| Sbjct: 38243 aacctgcctcaaagaggggga 38223 >gi|47825181 INFORMATION:. Mus musculus BAC clone RP23-181J14 from chromosome 15, complete Length = 199674 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 gagagagagaagcttgcttt 80 |||||||||||||||||||| Sbjct: 39431 gagagagagaagcttgcttt 39450 >gi|23462926 INFORMATION:. Mus musculus BAC clone RP24-397F8 from chromosome 12, complete Length = 140121 Score = 40.1 bits (20), Expect = 1.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 129 aagagggggacaacagttggaaac 152 |||||||||| ||||||||||||| Sbjct: 13214 aagagggggaaaacagttggaaac 13237 >gi|56787830 INFORMATION:. Mus musculus BAC clone RP24-426J4 from 15, complete sequence. Length = 166555 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 gagagagagaagcttgcttt 80 |||||||||||||||||||| Sbjct: 86226 gagagagagaagcttgcttt 86207 >gi|37806563 INFORMATION:. Mus musculus BAC clone RP23-197G20 from chromosome 12, complete Length = 199646 Score = 40.1 bits (20), Expect = 1.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 129 aagagggggacaacagttggaaac 152 |||||||||| ||||||||||||| Sbjct: 122753 aagagggggaaaacagttggaaac 122776 >gi|49659387 Mus musculus (house mouse). Mouse DNA sequence from clone RP23-38J2 on chromosome X, complete Length = 175713 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 gagggggacaacagttggaa 150 |||||||||||||||||||| Sbjct: 90175 gagggggacaacagttggaa 90194 >gi|68532109 Mus musculus (house mouse). Mus musculus 6 BAC RP23-54E12 (Roswell Park Cancer Institute Length = 211124 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 agagtttgatcctggctcag 20 |||||||||||||||||||| Sbjct: 180242 agagtttgatcctggctcag 180223 >gi|62000733 Mus musculus (house mouse). Mus musculus 6 BAC RP24-369M3 (Roswell Park Cancer Institute Length = 206335 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 agagtttgatcctggctcag 20 |||||||||||||||||||| Sbjct: 171274 agagtttgatcctggctcag 171293 >gi|34494975 INFORMATION:. Mus musculus BAC clone RP24-183I4 from chromosome 15, complete Length = 165791 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 64 agagagaagcttgctttct 82 ||||||||||||||||||| Sbjct: 24864 agagagaagcttgctttct 24846 >gi|50540839 Mus musculus (house mouse). Mus musculus chromosome 5, clone RP23-26P10, complete sequence. Length = 213155 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 113 tgaggaacctgcctcaaag 131 ||||||||||||||||||| Sbjct: 105900 tgaggaacctgcctcaaag 105882 >gi|22213503 INFORMATION:. Mus musculus BAC clone RP23-68E10 from 15, complete sequence. Length = 207411 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 64 agagagaagcttgctttct 82 ||||||||||||||||||| Sbjct: 5566 agagagaagcttgctttct 5584 >gi|84580039 Mus musculus (house mouse). Mus musculus chromosome 1, clone RP23-454G7, complete sequence. Length = 192734 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 132 agggggacaacagttggaa 150 ||||||||||||||||||| Sbjct: 118439 agggggacaacagttggaa 118457 >gi|29367461 Mus musculus (house mouse). Mouse DNA sequence from clone RP23-59L23 on chromosome X, complete Length = 158374 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 gagagagaagcttgctttc 81 ||||||||||||||||||| Sbjct: 50870 gagagagaagcttgctttc 50888 BLASTN 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|22212481|lcl|AB064906.1|AB064906 Human intestinal firmicute CO19 gene for 16S rRNA, partial sequence. (500 letters) Database: GBROD 314,789 sequences; 4,040,814,338 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|67514186 Mus musculus (house mouse). Mus musculus chromosome... 42 0.40 gi|63147532 INFORMATION:. Mus musculus BAC clone RP23-340N4 fro... 42 0.40 gi|23462926 INFORMATION:. Mus musculus BAC clone RP24-397F8 fro... 40 1.6 gi|37806563 INFORMATION:. Mus musculus BAC clone RP23-197G20 fr... 40 1.6 gi|49659387 Mus musculus (house mouse). Mouse DNA sequence from... 40 1.6 gi|68532109 Mus musculus (house mouse). Mus musculus 6 BAC RP23... 40 1.6 gi|62000733 Mus musculus (house mouse). Mus musculus 6 BAC RP24... 40 1.6 gi|30409931 INFORMATION:. Mus musculus BAC clone RP24-270C24 fr... 38 6.3 gi|26801321 INFORMATION:. Mus musculus BAC clone RP24-273C15 fr... 38 6.3 gi|50540839 Mus musculus (house mouse). Mus musculus chromosome... 38 6.3 gi|84580039 Mus musculus (house mouse). Mus musculus chromosome... 38 6.3 gi|37674342 Mus musculus (house mouse). Mus musculus, clone RP2... 38 6.3 gi|34366523 Mus musculus (house mouse). Mouse DNA sequence from... 38 6.3 gi|39540502 Mus musculus (house mouse). Mouse DNA sequence from... 38 6.3 >gi|67514186 Mus musculus (house mouse). Mus musculus chromosome 5, clone RP23-324H16, complete sequence. Length = 202586 Score = 42.1 bits (21), Expect = 0.40 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 aacctgcctcaaagaggggga 139 ||||||||||||||||||||| Sbjct: 193647 aacctgcctcaaagaggggga 193627 >gi|63147532 INFORMATION:. Mus musculus BAC clone RP23-340N4 from chromosome 5, complete Length = 186413 Score = 42.1 bits (21), Expect = 0.40 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 aacctgcctcaaagaggggga 139 ||||||||||||||||||||| Sbjct: 38243 aacctgcctcaaagaggggga 38223 >gi|23462926 INFORMATION:. Mus musculus BAC clone RP24-397F8 from chromosome 12, complete Length = 140121 Score = 40.1 bits (20), Expect = 1.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 aagagggggacaacagttggaaac 153 |||||||||| ||||||||||||| Sbjct: 13214 aagagggggaaaacagttggaaac 13237 >gi|37806563 INFORMATION:. Mus musculus BAC clone RP23-197G20 from chromosome 12, complete Length = 199646 Score = 40.1 bits (20), Expect = 1.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 aagagggggacaacagttggaaac 153 |||||||||| ||||||||||||| Sbjct: 122753 aagagggggaaaacagttggaaac 122776 >gi|49659387 Mus musculus (house mouse). Mouse DNA sequence from clone RP23-38J2 on chromosome X, complete Length = 175713 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 gagggggacaacagttggaa 151 |||||||||||||||||||| Sbjct: 90175 gagggggacaacagttggaa 90194 >gi|68532109 Mus musculus (house mouse). Mus musculus 6 BAC RP23-54E12 (Roswell Park Cancer Institute Length = 211124 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 agagtttgatcctggctcag 20 |||||||||||||||||||| Sbjct: 180242 agagtttgatcctggctcag 180223 >gi|62000733 Mus musculus (house mouse). Mus musculus 6 BAC RP24-369M3 (Roswell Park Cancer Institute Length = 206335 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 agagtttgatcctggctcag 20 |||||||||||||||||||| Sbjct: 171274 agagtttgatcctggctcag 171293 >gi|30409931 INFORMATION:. Mus musculus BAC clone RP24-270C24 from chromosome 13, complete Length = 169258 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 61 gagagataaggagcttgct 79 ||||||||||||||||||| Sbjct: 129322 gagagataaggagcttgct 129340 >gi|26801321 INFORMATION:. Mus musculus BAC clone RP24-273C15 from chromosome 13, complete Length = 154576 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 61 gagagataaggagcttgct 79 ||||||||||||||||||| Sbjct: 25920 gagagataaggagcttgct 25938 >gi|50540839 Mus musculus (house mouse). Mus musculus chromosome 5, clone RP23-26P10, complete sequence. Length = 213155 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 114 tgaggaacctgcctcaaag 132 ||||||||||||||||||| Sbjct: 105900 tgaggaacctgcctcaaag 105882 >gi|84580039 Mus musculus (house mouse). Mus musculus chromosome 1, clone RP23-454G7, complete sequence. Length = 192734 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 133 agggggacaacagttggaa 151 ||||||||||||||||||| Sbjct: 118439 agggggacaacagttggaa 118457 >gi|37674342 Mus musculus (house mouse). Mus musculus, clone RP23-340N7, complete sequence. Length = 202386 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 57 gaacgagagataaggagct 75 ||||||||||||||||||| Sbjct: 183268 gaacgagagataaggagct 183250 >gi|34366523 Mus musculus (house mouse). Mouse DNA sequence from clone RP23-228N14 on chromosome X, complete Length = 230114 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 57 gaacgagagataaggagct 75 ||||||||||||||||||| Sbjct: 167111 gaacgagagataaggagct 167093 >gi|39540502 Mus musculus (house mouse). Mouse DNA sequence from clone RP23-71H9 on chromosome 2, complete Length = 187610 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 61 gagagataaggagcttgct 79 ||||||||||||||||||| Sbjct: 32503 gagagataaggagcttgct 32521 Database: GBROD Posted date: Jun 8, 2007 8:27 PM Number of letters in database: 4,040,814,338 Number of sequences in database: 314,789 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 314789 Number of Hits to DB: 34,367,558 Number of extensions: 1619195 Number of successful extensions: 24690 Number of sequences better than 10.0: 19 Number of HSP's gapped: 24690 Number of HSP's successfully gapped: 28 Length of database: 4,040,814,338 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits) S2: 19 (38.2 bits)