/*
 * IndexUniprot.java
 */
package org.ngbw.utils;


import java.io.IOException;
import java.io.InputStream;


/**
 * 
 * @author Paul Hoover
 *
 */
class IndexUniprot extends IndexTask {

	public IndexUniprot(String dataset, String dataDir, String indexDir, String fileName) throws IOException
	{
		super(dataset, dataDir, indexDir, fileName);
	}


	public static void main(String[] args)
	{
		try {
			assert args.length == 4;

			(new IndexUniprot(args[0], args[1], args[2], args[3])).run();
		}
		catch (Exception err) {
			err.printStackTrace(System.err);

			System.exit(-1);
		}
	}


	protected void addRecords(InputStream inStream) throws IOException
	{
		UniprotParser parser = new UniprotParser(inStream);
		SequenceRecord record;

		while ((record = parser.nextRecord()) != null)
			addSequence(record);
	}
}