hmmbuild - build a hidden Markov model from an alignment
HMMER 2.2g (August 2001)
Copyright (C) 1992-2001 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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Alignment file:                    /home/susanc/hmmer/globins630.fa.aln
File format:                       Clustal
Search algorithm configuration:    Multiple domain (hmmls)
Model construction strategy:       MAP (gapmax hint: 0.50)
Null model used:                   (default)
Prior used:                        (default)
Sequence weighting method:         G/S/C tree weights
New HMM file:                      /home/susanc/hmmer/globins630.fa.aln.hmm 
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Alignment:           #1
Number of sequences: 630
Number of columns:   208

Determining effective sequence number    ... done. [65]
Weighting sequences heuristically        ... done.
Constructing model architecture          ... done.
Converting counts to probabilities       ... done.
Setting model name, etc.                 ... done. [globins630.fa]

Constructed a profile HMM (length 160)
Average score:      256.55 bits
Minimum score:      -55.00 bits
Maximum score:      342.20 bits
Std. deviation:      86.57 bits

Finalizing model configuration           ... done.
Saving model to file                     ... done.
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