BLASTN 2.2.14 [May-07-2006] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: GBUNA 211 sequences; 114,018 total letters Searching Query= GBUNA|AB086827|Unidentified AGfact-p mRNA for actin, partial cds. (901 letters) Score E Sequences producing significant alignments: (bits) Value GBUNA|AB086827|Unidentified AGfact-p mRNA for actin, partial cds. 1786 0.0 GBUNA|X99965|Bacterium sp. mark01 16S rRNA gene. 24 4.8 GBUNA|X84331|Unknown 16S rRNA gene (PCR fragment) of an archaeal... 24 4.8 GBUNA|X84084|Unknown organism 16S rRNA gene. 24 4.8 GBUNA|M25636|Figure 4. Nucleotide sequence of the pKS36 1.797 kb... 24 4.8 GBUNA|M23430|Figure 2. Complete nucleotide sequence of the mumps... 24 4.8 GBUNA|M12900|Insertion sequence IS15-R, complete cds. 24 4.8 GBUNA|AF298101|Unidentified clone B25 DNA sequence from ocean be... 24 4.8 >GBUNA|AB086827|Unidentified AGfact-p mRNA for actin, partial cds. Length = 901 Score = 1786 bits (901), Expect = 0.0 Identities = 901/901 (100%) Strand = Plus / Plus Query: 1 ggacagctatgtaggagacgaggcgcagagcaagcgaggtgtgctgaccttgaagtatcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ggacagctatgtaggagacgaggcgcagagcaagcgaggtgtgctgaccttgaagtatcc 60 Query: 61 cattgagcacggcatcgtcaccaattgggatgacatggaggagatttggcatcacacctt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 cattgagcacggcatcgtcaccaattgggatgacatggaggagatttggcatcacacctt 120 Query: 121 ctacaacgagctgcgtgtagctccggaagagcatccagtcttgctgactgaagctccctt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ctacaacgagctgcgtgtagctccggaagagcatccagtcttgctgactgaagctccctt 180 Query: 181 gaacccaaaggccaaccgtgaacgcatgactcagatcatgttcgagaccttcaacgtgcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gaacccaaaggccaaccgtgaacgcatgactcagatcatgttcgagaccttcaacgtgcc 240 Query: 241 tgcaatgtatgttgcaatccaggctgtgctgtccttgtatgcatctggccgaaccaccgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 tgcaatgtatgttgcaatccaggctgtgctgtccttgtatgcatctggccgaaccaccgg 300 Query: 301 aattgtgatggacagtggcgacggtgtgagccacaccgtgcccatctatgagggctatgc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 aattgtgatggacagtggcgacggtgtgagccacaccgtgcccatctatgagggctatgc 360 Query: 361 tttgcctcatgccattctgcgtttggacttggctggtcgtgaccttacggagtacatgat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 tttgcctcatgccattctgcgtttggacttggctggtcgtgaccttacggagtacatgat 420 Query: 421 gaagatcctcactgagcgcggctactccttcaccaccaccgctgagcgcgagattgttcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 gaagatcctcactgagcgcggctactccttcaccaccaccgctgagcgcgagattgttcg 480 Query: 481 agatgtcaaggagaaactttgctacatcgccttggacttcgacagcgagatgaaggctgc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 agatgtcaaggagaaactttgctacatcgccttggacttcgacagcgagatgaaggctgc 540 Query: 541 atctgagagcagtgacaaggagaagacttacgaattgcctgatggcaacatcatcaccgt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 atctgagagcagtgacaaggagaagacttacgaattgcctgatggcaacatcatcaccgt 600 Query: 601 tggatctgagcgtttccgctgcccagaagtcctgttccagccaagcttcgtgggcaagga 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 tggatctgagcgtttccgctgcccagaagtcctgttccagccaagcttcgtgggcaagga 660 Query: 661 ggccagcggcattcatgacaccaccttccaatcgattatgaagtgcgatgtcgatattcg 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 ggccagcggcattcatgacaccaccttccaatcgattatgaagtgcgatgtcgatattcg 720 Query: 721 aaaggatctctatgccaacgtggtgctttcaggtggaaccaccatgttccagggcattgg 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 aaaggatctctatgccaacgtggtgctttcaggtggaaccaccatgttccagggcattgg 780 Query: 781 tgagcgaatgaccaaggagctcactgctttggcaccgtccaccatgaagatcaaggtggt 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 tgagcgaatgaccaaggagctcactgctttggcaccgtccaccatgaagatcaaggtggt 840 Query: 841 tgctcctcctgagcgcaagtacagtgtgtggattggtggttctattctgtcttctctgag 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 tgctcctcctgagcgcaagtacagtgtgtggattggtggttctattctgtcttctctgag 900 Query: 901 c 901 | Sbjct: 901 c 901 >GBUNA|X99965|Bacterium sp. mark01 16S rRNA gene. Length = 469 Score = 24.3 bits (12), Expect = 4.8 Identities = 12/12 (100%) Strand = Plus / Minus Query: 815 ccgtccaccatg 826 |||||||||||| Sbjct: 111 ccgtccaccatg 100 >GBUNA|X84331|Unknown 16S rRNA gene (PCR fragment) of an archaeal microorganism. Length = 1435 Score = 24.3 bits (12), Expect = 4.8 Identities = 12/12 (100%) Strand = Plus / Plus Query: 334 caccgtgcccat 345 |||||||||||| Sbjct: 249 caccgtgcccat 260 >GBUNA|X84084|Unknown organism 16S rRNA gene. Length = 1437 Score = 24.3 bits (12), Expect = 4.8 Identities = 12/12 (100%) Strand = Plus / Plus Query: 334 caccgtgcccat 345 |||||||||||| Sbjct: 249 caccgtgcccat 260 >GBUNA|M25636|Figure 4. Nucleotide sequence of the pKS36 1.797 kb insert. Length = 1797 Score = 24.3 bits (12), Expect = 4.8 Identities = 12/12 (100%) Strand = Plus / Plus Query: 686 ttccaatcgatt 697 |||||||||||| Sbjct: 977 ttccaatcgatt 988 >GBUNA|M23430|Figure 2. Complete nucleotide sequence of the mumps virus M mRNA Length = 1244 Score = 24.3 bits (12), Expect = 4.8 Identities = 12/12 (100%) Strand = Plus / Minus Query: 751 aggtggaaccac 762 |||||||||||| Sbjct: 755 aggtggaaccac 744 >GBUNA|M12900|Insertion sequence IS15-R, complete cds. Length = 1721 Score = 24.3 bits (12), Expect = 4.8 Identities = 12/12 (100%) Strand = Plus / Plus Query: 25 gcagagcaagcg 36 |||||||||||| Sbjct: 558 gcagagcaagcg 569 Score = 24.3 bits (12), Expect = 4.8 Identities = 12/12 (100%) Strand = Plus / Plus Query: 25 gcagagcaagcg 36 |||||||||||| Sbjct: 1211 gcagagcaagcg 1222 >GBUNA|AF298101|Unidentified clone B25 DNA sequence from ocean beach sand. Length = 699 Score = 24.3 bits (12), Expect = 4.8 Identities = 12/12 (100%) Strand = Plus / Plus Query: 209 actcagatcatg 220 |||||||||||| Sbjct: 283 actcagatcatg 294 Database: GBUNA Posted date: Nov 19, 2007 4:52 PM Number of letters in database: 114,018 Number of sequences in database: 211 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 211 Number of Hits to DB: 1106 Number of extensions: 54 Number of successful extensions: 9 Number of sequences better than 10.0: 8 Number of HSP's gapped: 9 Number of HSP's successfully gapped: 9 Length of query: 901 Length of database: 114,018 Length adjustment: 13 Effective length of query: 888 Effective length of database: 111,275 Effective search space: 98812200 Effective search space used: 98812200 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 12 (24.3 bits) S2: 12 (24.3 bits)