package com.cipres.mrBayesPlugin;

import java.io.File;
import java.io.FileInputStream;
import java.io.IOException;
import java.io.InputStream;
import java.util.Properties;

import com.biomatters.geneious.publicapi.plugin.DocumentOperation;
import com.biomatters.geneious.publicapi.plugin.GeneiousPlugin;
import com.biomatters.geneious.publicapi.plugin.Icons;
import com.biomatters.geneious.publicapi.utilities.IconUtilities;
import com.cipres.mrBayesPlugin.utilities.CipresUtilities;

public class CipresMrBayesPlugin extends GeneiousPlugin{
	public String getName() {
        return "CIPRES";
    }

    public String getHelp() {
        return "Getting Help";
    }

    public String getDescription() {
        return "CIPRES Plugin";
    }
    
    public String getAuthors() {
    	return "Mark Zhuang";
    }

    public String getVersion() {
        return "0.3.1";
    }

    public String getMinimumApiVersion() {
        return "4.2019";
    }

    public int getMaximumApiVersion() {
        return 4;
    }
    
    @Override
    public String getEmailAddressForCrashes()
    {
    	Properties prop = new Properties();
    	InputStream input = null;
    	String email = null;
    	
    	try {

    		input = new FileInputStream(CipresUtilities.getConfigFilePath());

    		prop.load(input);
    		email = prop.getProperty("REPORTEMAIL");

    	} catch (IOException ex) {
    		ex.printStackTrace();
    	} finally {
    		if (email == null)
    			email = CipresUtilities.REPORTEMAIL;
    		
    		if (input != null) {
    			try {
    				input.close();
    			} catch (IOException e) {
    				e.printStackTrace();
    			}
    		}
    	}
    	return email;
    }
    
    @Override
	public DocumentOperation[] getDocumentOperations() {
		return new DocumentOperation[]{
				new CipresMrBayesToolbar(),
				new CipresMrBayesTree(),
				//new CipresRAxMLRESTXSEDETree(),
				new CipresRAxMLBBTree(),
				new CipresRAxMLRESTXSEDETree(),
				new IQTREEXSEDE_1_01_01Tree()
				};
	}
    
	private File pluginDirectory;
	public static Icons documentIcons;
	public static Icons toolbarIcons;
    public static Icons lightbulbIcon;
    public static Icons warningIcon;

	public void initialize(File INpluginUserDirectory, File pluginDirectory) {
        this.pluginDirectory = pluginDirectory;

        System.out.println("Hello");
        
        String posterior16Loc = "posterior16.png";
        String document16Loc = "document16.png";
        String posterior32Loc = "posterior32.png";
        String posterior24Loc = "posterior24.png";
        String lightbulb16Loc = "lightbulb16.png";
        String warning16Loc = "warning16.png";
//        if (new File(posterior16Loc).exists()) { //running from IntelliJ
        	documentIcons = IconUtilities.getIcons(document16Loc);
        //toolbarIcons = IconUtilities.getIcons(posterior16Loc, posterior24Loc);
        //lightbulbIcon = IconUtilities.getIcons(lightbulb16Loc);
        	warningIcon = IconUtilities.getIcons(warning16Loc);
//        } else {
//            documentIcons = IconUtilities.getIconsFromJar(getClass(), "/posterior16.png", "/posterior32.png");
//            toolbarIcons = IconUtilities.getIconsFromJar(getClass(), "/posterior16.png", "/posterior24.png");
//            lightbulbIcon = IconUtilities.getIconsFromJar(getClass(), "/lightbulb16.png");
//            warningIcon = IconUtilities.getIconsFromJar(getClass(), "/warning.png");
//        }
    }
}