Toolname: IQTREE_XSEDE_EXPANSE This is a test for a single binary test run. It produces this command line: iqtree2_2.1.2_expanse -s infile.txt -m TESTMERGE -o charmander --sprrad 6 --prefix iqtreemorph ################################### # other options # ################################### #the model selection option has three basic mutually exclusive choices: #THESE CHOICES ARE MUTAULLY EXCLUSIVE #specify_model_ allows IQ tree to decide the best model; #these values are allowed: TEST; TESTNEW; TESTMERGE; TESTNEWMERGE #specify_binmodel_ can be set when specify_model_ ; is not used; some users may want it. Allowed values: JC2; GTR2; MK; ORDERE #it might be useful to allow the user to enter their own model in free text. #the parameter is: freetextmodel_ =; it must be a legal model ################################## # Bootstrapping # ################################# #User may wish to do bootstrapping. This requires several additional parameters. #Invoke bootstrapping with #bootstrap_type_ = allowed options are: bb (Ultrafast); b (Non-Parametric; complete); bo (Non-Parametric; bo)bc (Non-Parametric; bc) #When a value for bootstrap_type_ is submitted, you must also provide: #num_bootreps_ and integer. At least 1000 when bootstrap_type_ = bb # at least 100 recommended when bootstrap_type_ is used, but not equal to bb #many other bootstrap options, but we cna explore those as needed. #The bootstrap_type is not a required parameter, bootstrapping is just an option.