#this tries rna sec structure and auto bootstopping curl -u $CRA_USER:$PASSWORD -H cipres-appkey:$KEY $URL/job/$CRA_USER/validate \ -F metadata.statusEmail=true \ -F tool=RAXMLHPC2_TGB \ -F input.infile_=@infile.phy \ -F input.partition_=@comet \ -F input.sec_str_file_=@comet \ -F vparam.convergence_criterion_=1 \ -F vparam.datatype_=rna \ -F vparam.disable_seqcheck_=1 \ -F vparam.dna_gtrcat_=GTRCAT \ -F vparam.estimate_perpartbrlen_=0 \ -F vparam.intermediate_treefiles_=1 \ -F vparam.mesquite_output_=1 \ -F vparam.mr_bootstopping_=1 \ -F vparam.mrbootstopping_type_=autoMRE \ -F vparam.mulparambootstrap_seed_=1 \ -F vparam.mulparambootstrap_seed_val_=12345 \ -F vparam.no_bfgs_=1 \ -F vparam.outsuffix_=result \ -F vparam.parsimony_seed_val_=12345 \ -F vparam.printbrlength_=0 \ -F vparam.provide_parsimony_seed_=1 \ -F vparam.rearrangement_yes_=0 \ -F vparam.rna_model_=S7F \ -F vparam.runtime_=0.25 \ -F vparam.use_bootstopping_=1