#!/bin/sh
# This is for running on COMET
#test change 

source $HOME/.bashrc

echo "CIPRES_THREADSPP=$CIPRES_THREADSPP"
echo "CIPRES_NP=$CIPRES_NP"
echo "running:"

export MODULEPATH="/projects/ps-ngbt/opt/comet/modules:$MODULEPATH"

module load python
module load scipy/3.6
module load meta-marc
module load spades

cmdline="$*"
echo $cmdline
$cmdline

for f in *; do
    if [[ -d $f ]]; then
        jar cvf ${f}.zip $f
        echo "archived subdir $f as ${f}.zip"
    fi
done
echo "... moving on"