#!/bin/sh

export MODULEPATH=/expanse/projects/ngbt/opt/expanse/modules:$MODULEPATH
module load garli/2.1.clang

Garli $*

ls *.best.tre > /dev/null 2>&1
if [ ! $? ]; then
	echo "combining .best.tre files in all.tre"
	grep -h ^tree *.best.tre > all.tre
fi
echo running collectBootTrees
/expanse/projects/ngbt/home/cipres/ngbw/contrib/scripts/collectBootTrees.sh

echo running post_garli.py
python3 /expanse/projects/ngbt/home/cipres/ngbw/contrib/scripts/post_garli.py