#!/bin/sh
 
 # Can't run module command (I think it's a bash fn) without sourcing bashrc
source $HOME/.bashrc

export MODULEPATH=export MODULEPATH=/expanse/projects/ngbt/opt/expanse/modules:$MODULEPATH
module load openjdk/11.0.2

conda activate depp_env
 
 
echo "CIPRES_THREADSPP=$CIPRES_THREADSPP"
echo "CIPRES_NP=$CIPRES_NP"
echo "running:"
echo "$*"
 
$*
 
conda deactivate
 
function archive_results
{
    for f in *; do
        if [[ -d $f ]]; then
            jar cvf ${f}.zip $f
            echo "archived subdir $f as ${f}.zip"
        fi
    done
}
 
trap archive_results SIGINT SIGTERM EXIT
 
echo "... moving on"