#!/bin/bash

function archive_results
{
    for f in *; do
        if [[ -d $f ]]; then
            jar cvf ${f}.zip $f
            echo "archived subdir $f as ${f}.zip"
        fi
    done
}

trap archive_results SIGINT SIGTERM EXIT

source $HOME/.bashrc
#export MODULEPATH=/share/apps/compute/modulefiles:$MODULEPATH
#export MODULEPATH=/share/apps/compute/modulefiles/applications:$MODULEPATH
export MODULEPATH=/share/apps/compute/modulefiles/applications:/share/apps/compute/modulefiles:$MODULEPATH
module load bali-phy/3.2

#this might be alright.
echo "CIPRES_THREADSPP=$CIPRES_THREADSPP"
echo "CIPRES_NP=$CIPRES_NP"
echo "running bali-phy $*"

bali-phy $*

echo "... moving on"