#!/bin/bash

function archive_results
{
    for f in *; do
        if [[ -d $f ]]; then
            jar cvf ${f}.zip $f
            echo "archived subdir $f as ${f}.zip"
        fi
    done
}

trap archive_results SIGINT SIGTERM EXIT

source $HOME/.bashrc
export MODULEPATH=/share/apps/compute/modulefiles:$MODULEPATH
#export MODULEPATH=/share/apps/compute/modulefiles/applications:$MODULEPATH

#I compiled it with openmp  (I can try to find the problem I found compiling with mpi if you'd like)
#Its in /share/apps/compute/bali-phy
#Jerry specified this call
export LD_LIBRARY_PATH=/share/apps/compute/gcc-6.2.0/lib64:$LD_LIBRARY_PATH

#this might be alright.
echo "CIPRES_THREADSPP=$CIPRES_THREADSPP"
echo "CIPRES_NP=$CIPRES_NP"
echo "running /share/apps/compute/bali-phy/bin/bali-phy $*"

/share/apps/compute/bali-phy/bin/bali-phy $*

#cmdline="$* ./"
#echo $cmdline
#$cmdline

echo "... moving on"