NGBW - Revision 19806: /cipres-config/trunk/sdk/scripts/remote_resource/trestles

• ..
• PBMultiRun.bash
• PBMultiRun_comet.bash
• PBMultiRun_expanse.bash
• PBterminator.bash
• RAxML-Light-1.0.9.sh
• SDSC-gateway-submit-attributes
• apples_expanse
• apply_beast2_compound_xslt.bash
• apply_beast2_compound_xslt2.bash
• apply_beast2_xslt.bash
• astral-hybrid_1.16_expanse
• astral-pro_1.15_expanse
• astral-pro_1.16_expanse
• astral_1.16_expanse
• astral_5.15.4_expanse
• astral_5.15.4_expanse.gpu
• bali_phy_3.0_wrapper_comet
• bali_phy_3.2_wrapper_comet
• bali_phy_3.4.1_wrapper_comet
• bali_phy_3.5.0_wrapper_comet
• bali_phy_3.6.1_2chains_expanse
• bali_phy_3.6.1_expanse
• bali_phy_3.6.1simple_expanse
• beast2onlywrapper_2.1.3
• beast2wrapper_2.1.3
• beast2wrapper_2.3.0
• beast2wrapper_2.3.0_oldXMLProcessor
• beast2wrapper_2.3.2
• beast2wrapper_2.3.2_withoutCipresModules
• beast2wrapper_2.4.2
• beast2wrapper_2.4.4
• beast2wrapper_2.4.4x
• beast2wrapper_2.4.5
• beast2wrapper_2.4.5_test
• beast2wrapper_2.4.6
• beast2wrapper_2.4.8
• beast2wrapper_2.4.8_centos7
• beast2wrapper_2.5.0
• beast2wrapper_2.5.0_centos7
• beast2wrapper_2.5.1
• beast2wrapper_2.5.1_centos7
• beast2wrapper_2.5.2
• beast2wrapper_2.5.2_centos7
• beast2wrapper_2.5.2_expanse
• beast2wrapper_2.6.0
• beast2wrapper_2.6.1
• beast2wrapper_2.6.1_centos7
• beast2wrapper_2.6.2_centos7
• beast2wrapper_2.6.3_expanse
• beast2wrapper_2.6.6.beagle4_expanse
• beast2wrapper_2.6.6.beagle4_expanse.cpu
• beast2wrapper_2.6.6.beagle4_expanse.gpu
• beast2wrapper_2.6.6_expanse
• beast2wrapper_2.6.6_expanse.gpu
• beast2wrapper_2.6.7_expanse
• beast2wrapper_2.6.7_expanse.gpu
• beast2wrapper_2.7.0_expanse
• beast2wrapper_2.7.0_expanse.gpu
• beast2wrapper_2.7.1_expanse
• beast2wrapper_2.7.1_expanse.gpu
• beast2wrapper_2.7.3_expanse
• beast2wrapper_2.7.3_expanse.gpu
• beast2wrapper_2.7.7_expanse
• beast2wrapper_2.7.7_expanse.gpu
• beast2wrapper_2.7.8_expanse
• beast2wrapper_2.7.8_expanse.gpu
• beastonlywrapper_1.8.0
• beastonlywrapper_1.8.1
• beastonlywrapper_1.8.2
• beastwrapper_1.10.2_comet
• beastwrapper_1.10.4.beagle4_expanse
• beastwrapper_1.10.4.beagle4_expanse.aff
• beastwrapper_1.10.4.beagle4_expanse.gpu
• beastwrapper_1.10.4.beagle4_expanse.reset
• beastwrapper_1.10.4_centos7
• beastwrapper_1.10.4_comet.beagle3
• beastwrapper_1.10.4_comet.centos7
• beastwrapper_1.10.4_expanse
• beastwrapper_1.10.4_expanse.gpu
• beastwrapper_1.10.5.pre_centos7
• beastwrapper_1.10.5.pre_comet.centos7
• beastwrapper_1.10.5dev.beagle4_expanse
• beastwrapper_1.10.5dev.beagle4_expanse.gpu
• beastwrapper_1.10.5dev_expanse
• beastwrapper_1.10.5dev_expanse.gpu
• beastwrapper_1.10_comet
• beastwrapper_1.8.0_comet
• beastwrapper_1.8.1
• beastwrapper_1.8.2
• beastwrapper_1.8.2_centos7
• beastwrapper_1.8.2_comet
• beastwrapper_1.8.2_comet_withoutCipresModules
• beastwrapper_1.8.2b_centos7
• beastwrapper_1.8.2b_comet
• beastwrapper_1.8.3_centos7
• beastwrapper_1.8.3_comet
• beastwrapper_1.8.3_comet.centos7
• beastwrapper_1.8.4.beagle4_expanse
• beastwrapper_1.8.4.beagle4_expanse.gpu
• beastwrapper_1.8.4_centos7
• beastwrapper_1.8.4_comet
• beastwrapper_1.8.4_comet.centos7
• beastwrapper_1.8.4_expanse
• beastwrapper_1.8.4_expanse.gpu
• beastwrapper_1.8.6_comet
• beastxwrapper_10.5.0_expanse
• beastxwrapper_10.5.0_expanse.gpu
• blast2_wrapper
• blast_parser.pl
• blast_wrapper
• blast_wrapper2
• blastn_wrapper
• braker3_expanse
• bwa_comet
• bwa_expanse
• checkjobs.py
• checkjobs_v2.py
• cipres-tgusage-new
• cipres-usage
• cipres_data_parse.py
• clann_4.2.5_expanse
• clann_cli_test
• clustalw_expanse
• collectBootTrees.sh
• comet_aws_lib.py
• comet_aws_submit.py
• comet_checkjobs.py
• comet_delete.py
• comet_garli2.0_wrap.sh
• comet_garli2.0_wrap_test.sh
• comet_lib.py
• comet_lib_will.py
• comet_submit.py
• comet_submit_will.py
• convert_parallel.sh
• create_link_expanse.sh
• cutadapt_expanse
• delete.py
• delete_v2.py
• depp_expanse
• depp_expanse.gpu
• dppdiv-pthreads
• epa-ng_0.3.7_comet
• epa-ng_0.3.8_expanse
• epa_ng_0.3.60_comet
• epa_ng_0.3.6_comet
• epa_ng_expanse
• exabayes_1.5.1.clang_expanse
• exabayes_1.5.1.gcc_expanse
• exabayes_consense_wrapper_1.5.0
• exabayes_wrapper_1.5
• exabayes_wrapper_1.5.0
• exabayes_wrapper_1.5_centos7
• expanse_checkjobs.py
• expanse_delete.py
• expanse_get_queue_size.sh
• expanse_lib.py
• expanse_submit.py
• expanse_submit.py.res
• fastml_wrapper_3.1
• fastml_wrapper_3.11_expanse
• fastml_wrapper_3.11_expanse_test
• fasttree_2.1.10
• fasttree_2.1.10_centos7
• fasttree_2.1.10_expanse
• fasttree_2.1.8
• fasttree_2.1.9
• fasttreewrappper
• fixascii
• g-phocs_1.3.2_comet
• g-phocs_1.3.2_expanse
• g-phocs_1.4.2_comet
• garli2.0_wrap.sh
• garli_2.1_expanse
• garli_wrap.sh
• gatk_xsede.centos7
• gatk_xsede.expanse
• genemark_4.371_expanse
• genetree_expanse
• genmap
• gordon_lib_v2.py
• gordon_submit_v2.py
• guidance2_expanse_2.0.2
• guidance2_wrapper_2.0.2
• halign4_expanse
• ima2p_1.0_comet
• ima2p_1.6.4_comet
• ima3_1.11_expanse
• ima3_1.11_expanse.bak
• ima3_1.11_wrap
• ima3_1.13_expanse
• inputParser.sh
• iqtree2_2.0.5_comet
• iqtree2_2.0.6_comet
• iqtree2_2.1.0_comet
• iqtree2_2.1.1_comet
• iqtree2_2.1.2_expanse
• iqtree2_2.2.2.5_expanse
• iqtree2_2.2.2.6_expanse
• iqtree2_2.2.2.7_expanse
• iqtree2_2.3.2_expanse
• iqtree2_2.4.0_expanse
• iqtree3_3.0.1.intel_expanse
• iqtree_1.5.4_comet
• iqtree_1.6.10_comet
• iqtree_1.6.10_expanse
• iqtree_1.6.12_expanse
• iqtree_1.6.1_comet
• iqtree_1.6.2_comet
• iqtree_1.6.6_comet
• iqtree_1.6.7_comet
• iqtree_1.6.9_comet
• jmodeltest2_2.1.10_expanse
• lib_v2.py
• logcombiner_1.10.4_centos7
• logcombiner_1.10.4_comet
• logcombiner_1.10.4_expanse
• logcombiner_1.8.3_centos7
• logcombiner_1.8.3_comet
• logcombiner_1.8.4_centos7
• logcombiner_1.8.4_comet
• logcombiner_1.8.4_expanse
• logcombiner_2.6.0_comet
• logcombiner_2.6.1_centos7
• logcombiner_2.6.3_expanse
• mafft68
• mafft_7305_comet
• mafft_7394_comet
• mafft_7402_comet
• mafft_7427_centos7
• mafft_7427_comet
• mafft_7453.gcc_expanse
• mafft_7471.clang_expanse
• mafft_7471.icc_expanse
• mafft_7490.dash_expanse
• mafft_7505_expanse
• mafft_7505_new_expanse
• mb_3.2.1_mpiwrapper
• mbhwrapper
• mbmpiwrapper
• mbmpiwrapper_3.2.3
• mbmpiwrapper_3.2.3_comet
• mbmpiwrapper_3.2.4
• mbmpiwrapper_3.2.6
• mbmpiwrapper_3.2.6_centos7
• mbmpiwrapper_3.2.6_centos7_test
• mbmpiwrapper_3.2.6_comet
• mbmpiwrapper_3.2.7a_centos7
• mbmpiwrapper_3.2.7a_comet.beagle3
• mbmpiwrapper_3.2.7a_comet.centos7
• mbmpiwrapper_3.2.7adev_centos7
• mbmpiwrapper_3.2.7adev_comet.centos7
• metamarc_wrapper_expanse
• metamarc_wrapper_test_centos7
• metaspades_wrapper_expanse
• metaspades_wrapper_test_centos7
• migrate-mpi_3.6.10_wrap
• migrate-mpi_3.6.11_wrap
• migrate-mpi_3.6.8_wrap
• migrate-mpi_3.7.2_comet.centos7
• migrate-mpi_4.2.14_comet.centos7
• migrate-mpi_4.2.14_expanse
• migrate-mpi_4.2.14_wrap
• migrate-mpi_4.4.4_expanse
• migrate-mpi_5.0.4_expanse
• migrate-mpi_5.0.6_expanse
• migrate_3.6.10_wrap
• migrate_3.6.11_wrap
• migrate_3.6.8_wrap
• migrate_3.7.2_comet.centos7
• migrate_4.2.14_comet.centos7
• migrate_4.2.14_expanse
• migrate_4.2.14_wrap
• migrate_4.4.4_expanse
• migrate_5.0.4_expanse
• modeltest_ng_0.1.6_expanse
• modeltest_ng_0.1.7_expanse
• modeltest_ng_comet
• mpboot_1.1.0_expanse
• mpboot_1.2_expanse
• mrbayes_3.2.6_expanse
• mrbayes_3.2.6_popeye
• mrbayes_3.2.7a.beagle4_expanse
• mrbayes_3.2.7a.beagle4_expanse.DoesntGetBeagle4
• mrbayes_3.2.7a_expanse
• mrbayes_3.2.7a_popeye
• mrbayes_3.2.8.libbeagle4_expanse
• muscle_5.1_expanse
• muscle_expanse
• nclconverter_expanse
• obsolete/
• opt/
• parallelstructure_2.3.4_expanse
• partitionfinder2_2.1.1_comet
• paup4a168_expanse
• pauprat_expanse
• phmmerwrapper_3.3.2_comet
• phylonet_3.6.4
• picard_comet
• picard_expanse
• popeye_checkjobs.py
• popeye_delete.py
• popeye_lib.py
• popeye_submit.py
• post_garli.py
• prothint_2.6.0_expanse
• pstructurewrapper_2.3.4_comet
• pythia_1.0.0_expanse
• pythia_1.0.0_expanse.rev
• ranger_dtl_comet_centos7
• raxml-ng_0.9.0
• raxml-ng_1.0.0
• raxml-ng_1.0.1_expanse
• raxml-ng_1.1.0.fast_expanse
• raxml-ng_1.2.0_expanse
• raxml-ng_1.2.1_expanse
• raxml-ng_1.2.2_expanse
• raxmlHPC-HYBRID
• raxmlHPC-HYBRID-gordon
• raxmlHPC-HYBRID-gordon_withoutModules
• raxmlHPC-HYBRID_8.1.24
• raxmlHPC-HYBRID_8.2.10_comet
• raxmlHPC-HYBRID_8.2.12_centos7
• raxmlHPC-HYBRID_8.2.12_comet
• raxmlHPC-HYBRID_8.2.12_expanse
• raxmlHPC-HYBRID_8.2.3
• raxmlHPC-HYBRID_8.2.4
• raxmlHPC-HYBRID_8.2.6
• raxmlHPC-HYBRID_8.2.8
• raxmlHPC-HYBRID_8.2.9
• raxmlHPC-HYBRID_8.2.9_gordon
• raxmlHPC-HYBRID_PB_8.3.12_expanse
• raxmlHPC-PTHREADS
• raxmlHPC-PTHREADS_8.1.24
• raxmlHPC-PTHREADS_8.2.10_comet
• raxmlHPC-PTHREADS_8.2.12_centos7
• raxmlHPC-PTHREADS_8.2.12_comet
• raxmlHPC-PTHREADS_8.2.12_expanse
• raxmlHPC-PTHREADS_8.2.3
• raxmlHPC-PTHREADS_8.2.4
• raxmlHPC-PTHREADS_8.2.6
• raxmlHPC-PTHREADS_8.2.8
• raxmlHPC-PTHREADS_8.2.9
• raxmlHPC-PTHREADS_8.2.9_gordon
• readseq_expanse
• revbayes_1.1.1.serial_expanse
• revbayes_1.1.1_expanse
• revbayes_1.2.1.serial_expanse
• revbayes_1.2.1_expanse
• revbayes_1.2.5_expanse
• revbayes_1.3.0_expanse
• samtools_comet
• samtools_expanse
• script.txt
• sleep_cp.sh
• snappwrapper
• spades_3.15.5_expanse
• spades_3.15.5_expanse.gcc10.2.0
• spades_3.15.5_expanse.gcc9.2.0
• statalign_3.4_1chain_expanse
• statalign_3.4_2chains_expanse
• statalign_3.4_2chains_expanse.bash
• submit_v2.py
• test_checkjobs.py
• test_comet_lib.py
• test_comet_submit.py
• test_expanse_lib.py
• test_expanse_submit.py
• test_gordon_lib.py
• test_gordon_submit.py
• test_lib.py
• test_popeye_checkjobs.py
• test_popeye_delete.py
• test_popeye_lib.py
• test_popeye_submit.py
• test_submit.py
• tree_grafter_comet_centos7
• treeannotator_1.10.4_centos7
• treeannotator_1.10.4_comet
• treeannotator_1.10.4_expanse
• treeannotator_1.8.3_centos7
• treeannotator_1.8.3_comet
• treeannotator_1.8.4_centos7
• treeannotator_1.8.4_comet
• treeannotator_1.8.4_expanse
• treeannotator_1.8.4_test_comet
• treeannotator_2.6.0_comet
• treeannotator_2.6.1_centos7
• treeannotator_2.6.3_expanse
• treeannotator_2.6.6_expanse
• trimal_expanse
• trimmomatic_expanse
• trimmomatic_wrapper
• upp_expanse_4.5.1
• workbench.rc
• ws.sh
• ws_cleanup.sh
• xdusage.py
• xdusage.sh
• y.Rscript