1.8.0 - 1.8.4 Bayesian Evolutionary Analysis by Sampling Trees - run on XSEDE Remco Boukaert, Alexei Drummond, Andrew Rambaut, and Marc A. Suchard Drummond, A. J. and A. Rambaut. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology 7:214. Suchard, M.A. and A. Rambaut. 2009. Many-Core algorithms for statistical phylogenetics. Bioinformatics XX:1-9. Phylogeny / Alignment beast_tg18 beast0_comet perl !$no_beagle && $which_beast eq "0" perl "" 0 beast0_nobeagle_comet perl $no_beagle && $which_beast == 0 perl "" 0 beast1_comet perl $which_beast == 1 perl "" 0 beast2_comet perl $which_beast == 2 perl "" 0 beast3_comet perl $which_beast == 3 && !$is_cloudeligible perl "" 0 beast3_comet_cloud perl $which_beast == 3 && $is_cloudeligible perl "" 0 beast4_comet perl $which_beast == 4 && !$is_cloudeligible perl "" 0 beast4_comet_cloud perl $which_beast == 4 && $is_cloudeligible perl "" 0 beast100_comet perl $which_beast == 10 perl "" 0 beast102_comet perl $which_beast == 102 && !$is_cloudeligible perl "" 0 beast102_comet_cloud perl $which_beast == 102 && $is_cloudeligible perl "" 0 beast104_comet perl $which_beast == 104 && !$is_cloudeligible perl "" 0 beast104_comet_cloud perl $which_beast == 104 && $is_cloudeligible perl "" 0 beast1045_comet perl $which_beast == 1045 && !$is_cloudeligible perl "" 0 beast1045_comet_cloud perl $which_beast == 1045 && $is_cloudeligible perl "" 0 number_nodes_codonp 2 scheduler.conf perl $which_beast < 3 && $codon_partitioning && $nu_partitions < 4 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=$nu_partitions\\n" partitions_codonp perl $which_beast < 3 && $codon_partitioning && $nu_partitions < 4 && !$no_beagle && !$datatype perl "-threads $nu_partitions -beagle_SSE -beagle_instances 1" 4 number_nodes_codonpb 2 scheduler.conf perl $which_beast < 3 && $codon_partitioning && $nu_partitions >= 4 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=4\\n" partitions_codonpb perl $which_beast < 3 && $codon_partitioning && $nu_partitions >= 4 && !$no_beagle && !$datatype perl "-threads 4 -beagle_SSE -beagle_instances 1" 4 number_nodes_1a 2 scheduler.conf perl $which_beast < 3 && !$codon_partitioning && $nu_partitions == 1 && $nu_patterns < 1200 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=2\\n" partitions_1a perl $which_beast < 3 && !$codon_partitioning && $nu_partitions == 1 && $nu_patterns < 1200 && !$no_beagle && !$datatype perl "-threads 2 -beagle_SSE -beagle_instances 2" 4 number_nodes_1b 2 scheduler.conf perl $which_beast < 3 && !$codon_partitioning && $nu_partitions == 1 && $nu_patterns > 1199 && $nu_patterns < 4000 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=4\\n" partitions_1b perl $which_beast < 3 && !$codon_partitioning && $nu_partitions == 1 && $nu_patterns > 1199 && $nu_patterns < 4000 && !$no_beagle && !$datatype perl "-threads 4 -beagle_SSE -beagle_instances 4" 4 number_nodes_1c 2 scheduler.conf perl $which_beast < 3 && !$codon_partitioning && $nu_partitions == 1 && $nu_patterns > 3999 && $nu_patterns < 6000 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=8\\n" partitions_1c perl $which_beast < 3 && !$codon_partitioning && $nu_partitions == 1 && $nu_patterns > 3999 && $nu_patterns < 6000 && !$no_beagle && !$datatype perl "-threads 8 -beagle_SSE -beagle_instances 8" 4 number_nodes_1d 2 scheduler.conf perl $which_beast < 3 && !$codon_partitioning && $nu_partitions == 1 && $nu_patterns > 5999 && $nu_patterns < 35000 && !$no_beagle && !$datatype perl "ChargeFactor=1.5\\n" . "gpu=1\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=1\\n" partitions_1d perl $which_beast < 3 && !$codon_partitioning && $nu_partitions == 1 && $nu_patterns > 5999 && $nu_patterns < 35000 && !$no_beagle && !$datatype perl "-threads 1 -beagle_instances 1 -beagle_GPU -beagle_cuda" 4 number_nodes_1f 2 scheduler.conf perl $which_beast < 3 && !$codon_partitioning && $nu_partitions == 1 && $nu_patterns >= 35000 && !$no_beagle && !$datatype perl "ChargeFactor=1.5\\n" . "gpu=4\\n" . "nodes=1\\n" . "node_exclusive=1\\n" . "threads_per_process=4\\n" partitions_1f perl $which_beast < 3 && !$codon_partitioning && $nu_partitions == 1 && $nu_patterns >= 35000 && !$no_beagle && !$datatype perl "-threads 4 -beagle_instances 4 -beagle_GPU -beagle_cuda -beagle_order 1,2,3,4" 4 number_nodes_2a 2 scheduler.conf perl $which_beast < 3 && !$codon_partitioning && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns < 1200 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=2\\n" partitions_2a perl $which_beast < 3 && !$codon_partitioning && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns < 1200 && !$no_beagle && !$datatype perl "-threads 2 -beagle_SSE -beagle_instances 1" 4 number_nodes_2b 2 scheduler.conf perl $which_beast < 3 && !$codon_partitioning && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns > 1199 && $nu_patterns < 5000 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=4\\n" partitions_2b perl $which_beast < 3 && !$codon_partitioning && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns > 1199 && $nu_patterns < 5000 && !$no_beagle && !$datatype perl "-threads 4 -beagle_SSE -beagle_instances 4" 4 number_nodes_2c 2 scheduler.conf perl $which_beast < 3 && !$codon_partitioning && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns > 4999 && $nu_patterns < 40000 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=6\\n" partitions_2c perl $which_beast < 3 && !$codon_partitioning && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns > 4999 && $nu_patterns < 40000 && !$no_beagle && !$datatype perl "-threads 6 -beagle_SSE -beagle_instances 6" 4 number_nodes_2d 2 scheduler.conf perl $which_beast < 3 && !$codon_partitioning && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns >= 40000 && !$no_beagle && !$datatype perl "ChargeFactor=1.5\\n" . "gpu=1\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=1\\n" partitions_2d perl $which_beast < 3 && !$codon_partitioning && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns >= 40000 && !$no_beagle && !$datatype perl "-threads 1 -beagle_instances 1 -beagle_GPU -beagle_cuda" 4 number_nodes_4a 2 scheduler.conf perl $which_beast < 3 && !$codon_partitioning && $nu_partitions > 3 && $nu_partitions < 10 && $nu_patterns < 1200 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=2\\n" partitions_4a perl $which_beast < 3 && !$codon_partitioning && $nu_partitions > 3 && $nu_partitions < 10 && $nu_patterns < 1200 && !$no_beagle && !$datatype perl "-threads 2 -beagle_SSE -beagle_instances 1" 4 number_nodes_4b 2 scheduler.conf perl $which_beast < 3 && !$codon_partitioning && $nu_partitions > 3 && $nu_partitions < 10 && $nu_patterns >= 1200 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=4\\n" partitions_4b perl $which_beast < 3 && !$codon_partitioning && $nu_partitions > 3 && $nu_partitions < 10 && $nu_patterns >= 1200 && !$no_beagle && !$datatype perl "-threads 4 -beagle_SSE -beagle_instances 2" 4 number_nodes_5a 2 scheduler.conf perl $which_beast < 3 && !$codon_partitioning && $nu_partitions > 9 && $nu_partitions < 40 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=4\\n" partitions_5a perl $which_beast < 3 && !$codon_partitioning && $nu_partitions > 9 && $nu_partitions < 40 && !$no_beagle && !$datatype perl "-threads 4 -beagle_SSE -beagle_instances 1" 4 number_nodes_6b 2 scheduler.conf perl $which_beast < 3 && !$codon_partitioning && $nu_partitions >= 40 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=2\\n" partitions_6b perl $which_beast < 3 && !$codon_partitioning && $nu_partitions >= 40 && !$no_beagle && !$datatype perl "-threads 2 -beagle_SSE -beagle_instances 1" 4 number_nodes_1a3 2 scheduler.conf perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions == 1 && $nu_patterns < 1200 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=2\\n" partitions_1a3 perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions == 1 && $nu_patterns < 1200 && !$no_beagle && !$datatype perl "-threads 2 -beagle_SSE -beagle_instances 2" 4 number_nodes_1b3 2 scheduler.conf perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions == 1 && $nu_patterns > 1199 && $nu_patterns < 4000 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=4\\n" partitions_1b3 perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions == 1 && $nu_patterns > 1199 && $nu_patterns < 4000 && !$no_beagle && !$datatype perl "-threads 4 -beagle_SSE -beagle_instances 4" 4 number_nodes_1c3 2 scheduler.conf perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions == 1 && $nu_patterns > 3999 && $nu_patterns < 6000 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=8\\n" partitions_1c3 perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions == 1 && $nu_patterns > 3999 && $nu_patterns < 6000 && !$no_beagle && !$datatype perl "-threads 8 -beagle_SSE -beagle_instances 8" 4 number_nodes_1d3 2 scheduler.conf perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions == 1 && $nu_patterns > 5999 && $nu_patterns < 35000 && !$no_beagle && !$datatype perl "ChargeFactor=1.5\\n" . "gpu=1\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=1\\n" partitions_1d3 perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions == 1 && $nu_patterns > 5999 && $nu_patterns < 35000 && !$no_beagle && !$datatype perl "-threads 1 -beagle_instances 1 -beagle_GPU -beagle_cuda" 4 number_nodes_1f3 2 scheduler.conf perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions == 1 && $nu_patterns >= 35000 && !$no_beagle && !$datatype perl "ChargeFactor=1.5\\n" . "gpu=4\\n" . "nodes=1\\n" . "node_exclusive=1\\n" . "threads_per_process=4\\n" partitions_1f3 perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions == 1 && $nu_patterns >= 35000 && !$no_beagle && !$datatype perl "-threads 4 -beagle_instances 4 -beagle_GPU -beagle_cuda -beagle_order 1,2,3,4" 4 number_nodes_2a3 2 scheduler.conf perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns < 1200 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=2\\n" partitions_2a3 perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns < 1200 && !$no_beagle && !$datatype perl "-threads 2 -beagle_SSE -beagle_instances 1" 4 number_nodes_2b3 2 scheduler.conf perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns > 1199 && $nu_patterns < 5000 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=4\\n" partitions_2b3 perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns > 1199 && $nu_patterns < 5000 && !$no_beagle && !$datatype perl "-threads 4 -beagle_SSE -beagle_instances 4" 4 number_nodes_2c3 2 scheduler.conf perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns > 4999 && $nu_patterns < 40000 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=6\\n" partitions_2c3 perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns > 4999 && $nu_patterns < 40000 && !$no_beagle && !$datatype perl "-threads 6 -beagle_SSE -beagle_instances 6" 4 number_nodes_2d3 2 scheduler.conf perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns >= 40000 && !$no_beagle && !$datatype perl "ChargeFactor=1.5\\n" . "gpu=1\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=1\\n" partitions_2d3 perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns >= 40000 && !$no_beagle && !$datatype perl "-threads 1 -beagle_instances 1 -beagle_GPU -beagle_cuda" 4 number_nodes_4a3 2 scheduler.conf perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 3 && $nu_partitions < 10 && $nu_patterns < 1200 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=2\\n" partitions_4a3 perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 3 && $nu_partitions < 10 && $nu_patterns < 1200 && !$no_beagle && !$datatype perl "-threads 2 -beagle_SSE -beagle_instances 1" 4 number_nodes_4b3 2 scheduler.conf perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 3 && $nu_partitions < 10 && $nu_patterns >= 1200 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=4\\n" partitions_4b3 perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 3 && $nu_partitions < 10 && $nu_patterns >= 1200 && !$no_beagle && !$datatype perl "-threads 4 -beagle_SSE -beagle_instances 2" 4 number_nodes_5a3 2 scheduler.conf perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 9 && $nu_partitions < 40 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=4\\n" partitions_5a3 perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 9 && $nu_partitions < 40 && !$no_beagle && !$datatype perl "-threads 4 -beagle_SSE -beagle_instances 1" 4 number_nodes_6b3 2 scheduler.conf perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions >= 40 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=2\\n" partitions_6b3 perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions >= 40 && !$no_beagle && !$datatype perl "-threads 2 -beagle_SSE -beagle_instances 1" 4 number_nodes_1a102 2 scheduler.conf perl $which_beast == 102 && $nu_partitions == 1 && $nu_patterns < 1200 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=2\\n" partitions_1a102 perl $which_beast == 102 && $nu_partitions == 1 && $nu_patterns < 1200 && !$no_beagle && !$datatype perl "-threads 2 -beagle_SSE -beagle_instances 2" 4 number_nodes_1b102 2 scheduler.conf perl $which_beast == 102 && $nu_partitions == 1 && $nu_patterns > 1199 && $nu_patterns < 4000 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=4\\n" partitions_1b102 perl $which_beast == 102 && $nu_partitions == 1 && $nu_patterns > 1199 && $nu_patterns < 4000 && !$no_beagle && !$datatype perl "-threads 4 -beagle_SSE -beagle_instances 4" 4 number_nodes_1c102 2 scheduler.conf perl $which_beast == 102 && $nu_partitions == 1 && $nu_patterns > 3999 && $nu_patterns < 6000 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=8\\n" partitions_1c102 perl $which_beast == 102 && $nu_partitions == 1 && $nu_patterns > 3999 && $nu_patterns < 6000 && !$no_beagle && !$datatype perl "-threads 8 -beagle_SSE -beagle_instances 8" 4 number_nodes_1d102 2 scheduler.conf perl $which_beast == 102 && $nu_partitions == 1 && $nu_patterns > 5999 && !$no_beagle && !$datatype perl "ChargeFactor=1.5\\n" . "gpu=1\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=1\\n" partitions_1d102 perl $which_beast == 102 && $nu_partitions == 1 && $nu_patterns > 5999 && !$no_beagle && !$datatype perl "-threads 1 -beagle_instances 1 -beagle_GPU -beagle_cuda" 4 number_nodes_2a102 2 scheduler.conf perl $which_beast == 102 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns < 1200 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=2\\n" partitions_2a102 perl $which_beast == 102 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns < 1200 && !$no_beagle && !$datatype perl "-threads 2 -beagle_SSE -beagle_instances 1" 4 number_nodes_2b102 2 scheduler.conf perl $which_beast == 102 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns > 1199 && $nu_patterns < 5000 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=4\\n" partitions_2b102 perl $which_beast == 102 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns > 1199 && $nu_patterns < 5000 && !$no_beagle && !$datatype perl "-threads 4 -beagle_SSE -beagle_instances 4" 4 number_nodes_2c102 2 scheduler.conf perl $which_beast == 102 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns > 4999 && $nu_patterns < 40000 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=6\\n" partitions_2c102 perl $which_beast == 102 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns > 4999 && $nu_patterns < 40000 && !$no_beagle && !$datatype perl "-threads 6 -beagle_SSE -beagle_instances 6" 4 number_nodes_2d102 2 scheduler.conf perl $which_beast == 102 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns >= 40000 && !$no_beagle && !$datatype perl "ChargeFactor=1.5\\n" . "gpu=1\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=1\\n" partitions_2d102 perl $which_beast == 102 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns >= 40000 && !$no_beagle && !$datatype perl "-threads 1 -beagle_instances 1 -beagle_GPU -beagle_cuda" 4 number_nodes_4a102 2 scheduler.conf perl $which_beast == 102 && $nu_partitions > 3 && $nu_partitions < 10 && $nu_patterns < 1200 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=2\\n" partitions_4a102 perl $which_beast == 102 && $nu_partitions > 3 && $nu_partitions < 10 && $nu_patterns < 1200 && !$no_beagle && !$datatype perl "-threads 2 -beagle_SSE -beagle_instances 1" 4 number_nodes_4b102 2 scheduler.conf perl $which_beast == 102 && $nu_partitions > 3 && $nu_partitions < 10 && $nu_patterns >= 1200 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=4\\n" partitions_4b102 perl $which_beast == 102 && $nu_partitions > 3 && $nu_partitions < 10 && $nu_patterns >= 1200 && !$no_beagle && !$datatype perl "-threads 4 -beagle_SSE -beagle_instances 2" 4 number_nodes_5a102 2 scheduler.conf perl $which_beast == 102 && $nu_partitions > 9 && $nu_partitions < 40 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=4\\n" partitions_5a102 perl $which_beast == 102 && $nu_partitions > 9 && $nu_partitions < 40 && !$no_beagle && !$datatype perl "-threads 4 -beagle_SSE -beagle_instances 1" 4 number_nodes_6b102 2 scheduler.conf perl $which_beast == 102 && $nu_partitions >= 40 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=2\\n" partitions_6b102 perl $which_beast == 102 && $nu_partitions >= 40 && !$no_beagle && !$datatype perl "-threads 2 -beagle_SSE -beagle_instances 1" 4 number_nodes_1_9a104 2 scheduler.conf perl $which_beast >= 104 && $nu_partitions >= 1 && $nu_partitions <= 9 && $nu_patterns < 1000 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=2\\n" partitions_1_9a104 perl $which_beast >= 104 && $nu_partitions >= 1 && $nu_partitions <= 9 && $nu_patterns < 1000 && !$no_beagle && !$datatype perl "-beagle_SSE -beagle_thread_count 2 " 4 number_nodes_1_9b104 2 scheduler.conf perl $which_beast >= 104 && $nu_partitions >= 1 && $nu_partitions <= 9 && $nu_patterns > 999 && $nu_patterns < 10000 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=4\\n" partitions_1_9b104 perl $which_beast >= 104 && $nu_partitions >= 1 && $nu_partitions <= 9 && $nu_patterns > 999 && $nu_patterns < 10000 && !$no_beagle && !$datatype perl " -beagle_SSE -beagle_thread_count 4" 4 number_nodes_1_9c104 2 scheduler.conf perl $which_beast >= 104 && $nu_partitions >= 1 && $nu_partitions <= 9 && $nu_patterns > 9999 && !$no_beagle && !$datatype perl "ChargeFactor=1.5\\n" . "gpu=1\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=1\\n" partitions_1c104 perl $which_beast >= 104 && $nu_partitions >= 1 && $nu_partitions <= 9 && $nu_patterns > 9999 && !$no_beagle && !$datatype perl "-threads 1 -beagle_GPU -beagle_cuda" 4 number_nodes_10a104 2 scheduler.conf perl $which_beast >= 104 && $nu_partitions >= 10 && !$no_beagle && !$datatype perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=4\\n" partitions_10a104 perl $which_beast >= 104 && $nu_partitions >= 10 && !$no_beagle && !$datatype perl "-beagle_SSE -beagle_thread_count 4" 4 nb_number_threads1 2 scheduler.conf perl $nu_partitions == 1 && $no_beagle perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=1\\n" nb_partitions_1 perl $nu_partitions == 1 && $no_beagle && $which_beast == 0 perl "-threads 1" 3 nb_partitions_1b perl $nu_partitions == 1 && $no_beagle && $which_beast ne "0" perl "-threads 1 -beagle_off" 3 nb_number_threads2 2 scheduler.conf perl $nu_partitions == 2 && $no_beagle perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=2\\n" nb_partitions_2 perl $nu_partitions == 2 && $no_beagle && $which_beast eq "0" perl "-threads 2 " 4 nb_partitions_2b perl $nu_partitions == 2 && $no_beagle && $which_beast ne "0" perl "-threads 2 -beagle_off" 4 nb_number_threads3 2 scheduler.conf perl $nu_partitions > 2 && $nu_patterns < 1600 && $no_beagle perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=2\\n" nb_partitions_3 perl $nu_partitions > 2 && $nu_patterns < 1600 && $no_beagle && $which_beast eq "0" perl "-threads 2 " 4 nb_partitions_3c perl $nu_partitions > 2 && $nu_patterns < 1600 && $no_beagle && $which_beast ne "0" perl "-threads 2 -beagle_off" 4 nb_number_threads3b 2 scheduler.conf perl $nu_partitions > 2 && $nu_patterns >= 1600 && $no_beagle perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=3\\n" nb_partitions_3b perl $nu_partitions > 2 && $nu_patterns >= 1600 && $no_beagle && $which_beast eq "0" perl "-threads 3 " 4 nb_partitions_3d perl $nu_partitions > 2 && $nu_patterns >= 1600 && $no_beagle && $which_beast ne "0" perl "-threads 3 -beagle_off" 4 number_nodes_protein_1 2 scheduler.conf perl $datatype && !$no_beagle && $which_beast > 2 && $which_beast <= 10 && $nu_partitions <= 1 && $nu_patterns <= 4999 perl "ChargeFactor=1.5\\n" . "gpu=1\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=1\\n" partitions_protein_1 perl $datatype && !$no_beagle && $which_beast > 2 && $which_beast <= 10 && $nu_partitions <= 1 && $nu_patterns <= 4999 perl "-threads 1 -beagle_instances 1 -beagle_GPU -beagle_cuda" 4 number_nodes_protein_1b 2 scheduler.conf perl $datatype && !$no_beagle && $which_beast > 2 && $which_beast <= 10 && $nu_partitions <= 1 && $nu_patterns >= 5000 perl "ChargeFactor=1.5\\n" . "gpu=4\\n" . "nodes=1\\n" . "node_exclusive=1\\n" . "threads_per_process=4\\n" partitions_protein_1b perl $datatype && !$no_beagle && $which_beast > 2 && $which_beast <= 10 && $nu_partitions <= 1 && $nu_patterns >= 5000 perl "-threads 4 -beagle_instances 4 -beagle_GPU -beagle_cuda -beagle_order 1,2,3,4" 4 number_nodes_protein_239 2 scheduler.conf perl $datatype && !$no_beagle && $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 1 && $nu_partitions < 40 perl "ChargeFactor=1.5\\n" . "gpu=1\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=1\\n" partitions_protein_239 perl $datatype && !$no_beagle && $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 1 && $nu_partitions < 40 perl "-threads 1 -beagle_instances 1 -beagle_GPU -beagle_cuda" 4 number_nodes_protein_40 2 scheduler.conf perl $datatype && !$no_beagle && $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 39 perl "ChargeFactor=1.5\\n" . "gpu=4\\n" . "nodes=1\\n" . "node_exclusive=1\\n" . "threads_per_process=4\\n" partitions_protein_40 perl $datatype && !$no_beagle && $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 39 perl "-threads 4 -beagle_instances 4 -beagle_GPU -beagle_cuda -beagle_order 1,2,3,4" 4 number_nodes_protein_102_239 2 scheduler.conf perl $datatype && !$no_beagle && $which_beast == 102 && $nu_partitions >= 1 && $nu_partitions < 40 perl "ChargeFactor=1.5\\n" . "gpu=1\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=1\\n" partitions_protein_102_239 perl $datatype && !$no_beagle && $which_beast == 102 && $nu_partitions >= 1 && $nu_partitions < 40 perl "-threads 1 -beagle_instances 1 -beagle_GPU -beagle_cuda" 4 number_nodes_protein_102_40 2 scheduler.conf perl $datatype && !$no_beagle && $which_beast == 102 && $nu_partitions > 39 perl "ChargeFactor=1.0\\n" . "nodes=1\\n" . "node_exclusive=1\\n" . "threads_per_process=24\\n" partitions_protein_102_40 perl $datatype && !$no_beagle && $which_beast == 102 && $nu_partitions > 39 perl "-threads 24 -beagle_instances 24 -beagle_SSE" 4 number_nodes_protein_104_all 2 scheduler.conf perl $datatype && !$no_beagle && $which_beast >= 104 perl "ChargeFactor=1.5\\n" . "gpu=1\\n" . "nodes=1\\n" . "node_exclusive=0\\n" . "threads_per_process=1\\n" partitions_protein_104_all perl $datatype && !$no_beagle && $which_beast >= 104 perl "-threads 1 -beagle_GPU -beagle_cuda" 4 infile Input File (must be in BEAST XML format) perl "infile.xml" 99 infile.xml all_results * which_beast Which Version of BEAST do you wish to run? 0 Version 1.8.0 1 Version 1.8.1 2 Version 1.8.2 3 Version 1.8.3 4 Version 1.8.4 104 Please choose a BEAST version perl !defined $which_beast Sorry, you cant turn off BEAGLE for BEAST version 1.10 and above. perl $which_beast > 4 && $no_beagle 4 This option is offered because sometimes a bug in the interface between BEAST and BEAGLE prevents a run from completing. Use this option if you wish to run a data set that has failed using the normal BEAST/BEAGLE implementation. Runs made this way are always slower, so use this option as a last resort. no_beagle Do not use Beagle 0 The Do not use Beagle option is intended only for cases when runs with Beagle fail. Runs without Beagle are slower and less efficient. perl $no_beagle == 1 4 This option is offered because sometimes a bug in the interface between BEAST and BEAGLE prevents a run from completing. Use this option if you wish to run a data set that has failed using the normal BEAST/BEAGLE implementation. Runs made this way are always slower, so use this option as a last resort. runtime 1 scheduler.conf Maximum Hours to Run (up to 168 hours for non-gpu; 120 for gpu jobs) 0.5 The maximum runtime for a non-gpu job can be no more than 168 hours perl $runtime > 168.0 && $no_beagle The maximum runtime for a non-gpu job can be no more than 168 hours perl $runtime > 168.0 && $which_beast <= 2 && $codon_partitioning && !$no_beagle && !$datatype The maximum runtime for a non-gpu job can be no more than 168 hours perl $runtime > 168.0 && $which_beast <= 2 && !$codon_partitioning && $nu_partitions == 1 && $nu_patterns < 6000 && !$no_beagle && !$datatype The maximum runtime for a non-gpu job can be no more than 168 hours perl $runtime > 168.0 && $which_beast > 2 && $which_beast <= 10 && $nu_partitions == 1 && $nu_patterns < 6000 && !$no_beagle && !$datatype The maximum runtime for a gpu job can be no more than 120 hours perl $runtime > 120.0 && $which_beast < 3 && !$codon_partitioning && $nu_partitions == 1 && $nu_patterns > 5999 && $nu_patterns < 35000 && !$no_beagle && !$datatype The maximum runtime for a gpu job can be no more than 120 hours perl $runtime > 120.0 && $which_beast < 3 && !$codon_partitioning && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns >= 40000 && !$no_beagle && !$datatype The maximum runtime for a gpu job can be no more than 120 hours perl $runtime > 120.0 && $which_beast > 2 && $which_beast <= 10 && $nu_partitions == 1 && $nu_patterns > 5999 && $nu_patterns < 35000 && !$no_beagle && !$datatype The maximum runtime for a gpu job can be no more than 120 hours perl $runtime > 120.0 && $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns >= 40000 && !$no_beagle && !$datatype The maximum runtime for a gpu job can be no more than 120 hours perl $runtime > 120.0 && $which_beast == 102 && $nu_partitions == 1 && $nu_patterns > 5999 && !$no_beagle && !$datatype The maximum runtime for a gpu job can be no more than 120 hours perl $runtime > 120.0 && $which_beast == 102 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns >= 40000 && !$no_beagle && !$datatype The maximum runtime for a gpu job can be no more than 120 hours perl $runtime > 120.0 && $which_beast >= 104 && $nu_partitions >= 1 && $nu_partitions <= 9 && $nu_patterns > 9999 && !$no_beagle && !$datatype The maximum runtime for a gpu job can be no more than 120 hours perl $runtime > 120.0 && $datatype && !$no_beagle && $which_beast > 2 && $which_beast <= 10 && $nu_partitions <= 1 && $nu_patterns <= 4999 The maximum runtime for a gpu job can be no more than 120 hours perl $runtime > 120.0 && $datatype && !$no_beagle && $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 1 && $nu_partitions < 40 The maximum runtime for a gpu job can be no more than 120 hours perl $runtime > 120.0 && $datatype && !$no_beagle && $which_beast == 102 && $nu_partitions >= 1 && $nu_partitions < 40 The maximum runtime for a gpu job can be no more than 120 hours perl $runtime > 120.0 && $datatype && !$no_beagle && $which_beast >= 104 The maximum runtime for a non-gpu job can be no more than 168 hours perl $runtime > 168.0 && $which_beast <= 2 && $which_beast <= 10 && !$codon_partitioning && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns < 35000 && !$no_beagle && !$datatype The maximum runtime for a non-gpu job can be no more than 168 hours perl $runtime > 168.0 && $which_beast <= 2 && $which_beast <= 10 && !$codon_partitioning && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns < 35000 && !$no_beagle && !$datatype The maximum runtime for a non-gpu job can be no more than 168 hours perl $runtime > 168.0 && $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns < 40000 && !$no_beagle && !$datatype The maximum runtime for a non-gpu job can be no more than 168 hours perl $runtime > 168.0 && $which_beast >= 104 && $nu_partitions < 10 && $nu_patterns < 10000 && !$no_beagle && !$datatype The maximum hours to run must be greater than 0.05 perl $runtime < 0.05 perl "runhours=$value\\n" The job will run on 1 processor as configured. If it runs for the entire configured time, it will consume 1 X $runtime cpu hours perl $which_beast < 3 && $codon_partitioning && $nu_partitions == 1 && !$no_beagle && !$datatype The job will run on 2 processors as configured. If it runs for the entire configured time, it will consume 2 X $runtime cpu hours perl $which_beast < 3 && $codon_partitioning && $nu_partitions == 2 && !$no_beagle && !$datatype The job will run on 3 processors as configured. If it runs for the entire configured time, it will consume 3 X $runtime cpu hours perl $which_beast < 3 && $codon_partitioning && $nu_partitions == 3 && !$no_beagle && !$datatype The job will run on 4 processors as configured. If it runs for the entire configured time, it will consume 4 X $runtime cpu hours perl $which_beast < 3 && $codon_partitioning && $nu_partitions >= 4 && !$no_beagle && !$datatype The job will run on 2 processors as configured. If it runs for the entire configured time, it will consume 2 X $runtime cpu hours perl $which_beast < 3 && !$codon_partitioning && $nu_partitions == 1 && $nu_patterns < 1200 && !$no_beagle && !$datatype The job will run on 4 processors as configured. If it runs for the entire configured time, it will consume 4 X $runtime cpu hours perl $which_beast < 3 && !$codon_partitioning && $nu_partitions == 1 && $nu_patterns > 1199 && $nu_patterns < 4000 && !$no_beagle && !$datatype The job will run on 8 processors as configured. If it runs for the entire configured time, it will consume 8 X $runtime cpu hours perl $which_beast < 3 && !$codon_partitioning && $nu_partitions == 1 && $nu_patterns > 3999 && $nu_patterns < 6000 && !$no_beagle && !$datatype The job will run on 1 processors (and 1 gpu) as configured. If it runs for the entire configured time, it will consume 21 X $runtime cpu hours perl $which_beast < 3 && !$codon_partitioning && $nu_partitions == 1 && $nu_patterns > 5999 && $nu_patterns < 35000 && !$no_beagle && !$datatype The job will run on 4 processors (and 4 gpu) as configured. If it runs for the entire configured time, it will consume 84 X $runtime cpu hours perl $which_beast < 3 && !$codon_partitioning && $nu_partitions == 1 && $nu_patterns > 34999 && !$no_beagle && !$datatype The job will run on 2 processors as configured. If it runs for the entire configured time, it will consume 2 X $runtime cpu hours perl $which_beast < 3 && !$codon_partitioning && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns < 1200 && !$no_beagle && !$datatype The job will run on 4 processors as configured. If it runs for the entire configured time, it will consume 4 X $runtime cpu hours perl $which_beast < 3 && !$codon_partitioning && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns > 1199 && $nu_patterns < 5000 && !$no_beagle && !$datatype The job will run on 6 processors as configured. If it runs for the entire configured time, it will consume 6 X $runtime cpu hours perl $which_beast < 3 && !$codon_partitioning && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns > 4999 && $nu_patterns < 40000 && !$no_beagle && !$datatype The job will run on 1 processors (and 1 gpu) as configured. If it runs for the entire configured time, it will consume 21 X $runtime cpu hours perl $which_beast < 3 && !$codon_partitioning && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns > 39999 && !$no_beagle && !$datatype The job will run on 2 processors as configured. If it runs for the entire configured time, it will consume 2 X $runtime cpu hours perl $which_beast < 3 && !$codon_partitioning && $nu_partitions > 3 && $nu_partitions < 10 && $nu_patterns < 1200 && !$no_beagle && !$datatype The job will run on 4 processors as configured. If it runs for the entire configured time, it will consume 4 X $runtime cpu hours perl $which_beast < 3 && !$codon_partitioning && $nu_partitions > 3 && $nu_partitions < 10 && $nu_patterns > 1199 && !$no_beagle && !$datatype The job will run on 4 processors as configured. If it runs for the entire configured time, it will consume 4 X $runtime cpu hours perl $which_beast < 3 && !$codon_partitioning && $nu_partitions > 9 && $nu_partitions < 40 && !$no_beagle && !$datatype The job will run on 2 processors as configured. If it runs for the entire configured time, it will consume 2 X $runtime cpu hours perl $which_beast < 3 && !$codon_partitioning && $nu_partitions > 39 && !$no_beagle && !$datatype The job will run on 2 processors as configured. If it runs for the entire configured time, it will consume 2 X $runtime cpu hours perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions == 1 && $nu_patterns < 1200 && !$no_beagle && !$datatype The job will run on 4 processors as configured. If it runs for the entire configured time, it will consume 4 X $runtime cpu hours perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions == 1 && $nu_patterns > 1199 && $nu_patterns < 4000 && !$no_beagle && !$datatype The job will run on 8 processors as configured. If it runs for the entire configured time, it will consume 8 X $runtime cpu hours perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions == 1 && $nu_patterns > 3999 && $nu_patterns < 6000 && !$no_beagle && !$datatype The job will run on 1 processors (and 1 gpu) as configured. If it runs for the entire configured time, it will consume 21 X $runtime cpu hours perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions == 1 && $nu_patterns > 5999 && $nu_patterns < 35000 && !$no_beagle && !$datatype The job will run on 4 processors (and 4 gpu) as configured. If it runs for the entire configured time, it will consume 84 X $runtime cpu hours perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions == 1 && $nu_patterns > 34999 && !$no_beagle && !$datatype The job will run on 2 processors as configured. If it runs for the entire configured time, it will consume 2 X $runtime cpu hours perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns < 1200 && !$no_beagle && !$datatype The job will run on 4 processors as configured. If it runs for the entire configured time, it will consume 4 X $runtime cpu hours perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns > 1199 && $nu_patterns < 5000 && !$no_beagle && !$datatype The job will run on 6 processors as configured. If it runs for the entire configured time, it will consume 6 X $runtime cpu hours perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns > 4999 && $nu_patterns < 40000 && !$no_beagle && !$datatype The job will run on 1 processors (and 1 gpu) as configured. If it runs for the entire configured time, it will consume 21 X $runtime cpu hours perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns > 39999 && !$no_beagle && !$datatype The job will run on 2 processors as configured. If it runs for the entire configured time, it will consume 2 X $runtime cpu hours perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 3 && $nu_partitions < 10 && $nu_patterns < 1200 && !$no_beagle && !$datatype The job will run on 4 processors as configured. If it runs for the entire configured time, it will consume 4 X $runtime cpu hours perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 3 && $nu_partitions < 10 && $nu_patterns > 1199 && !$no_beagle && !$datatype The job will run on 4 processors as configured. If it runs for the entire configured time, it will consume 4 X $runtime cpu hours perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 9 && $nu_partitions < 40 && !$no_beagle && !$datatype The job will run on 2 processors as configured. If it runs for the entire configured time, it will consume 2 X $runtime cpu hours perl $which_beast > 2 && $which_beast <= 10 && $nu_partitions > 39 && !$no_beagle && !$datatype The job will run on 1 processors as configured. If it runs for the entire configured time, it will consume 1 X $runtime cpu hours perl $nu_partitions == 1 && $no_beagle The job will run on 2 processors as configured. If it runs for the entire configured time, it will consume 2 X $runtime cpu hours perl $nu_partitions == 2 && $no_beagle The job will run on 2 processors as configured. If it runs for the entire configured time, it will consume 2 X $runtime cpu hours perl $nu_partitions > 2 && $nu_patterns < 1600 && $no_beagle The job will run on 3 processors as configured. If it runs for the entire configured time, it will consume 3 X $runtime cpu hours perl $nu_partitions > 2 && $nu_patterns >= 1600 && $no_beagle The job will run on 1 processors (and 1 gpu) as configured. If it runs for the entire configured time, it will consume 21 X $runtime cpu hours perl $which_beast < 102 && $datatype && !$no_beagle && $nu_partitions <= 1 && $nu_patterns <= 4999 The job will run on 4 processors (and 4 gpu) as configured. If it runs for the entire configured time, it will consume 84 X $runtime cpu hours perl $which_beast < 102 && $datatype && !$no_beagle && $nu_partitions <= 1 && $nu_patterns >= 5000 The job will run on 1 processors (and 1 gpu) as configured. If it runs for the entire configured time, it will consume 21 X $runtime cpu hours perl $which_beast < 102 && $datatype && !$no_beagle && $nu_partitions > 1 && $nu_partitions < 40 The job will run on 4 processors (and 4 gpu) as configured. If it runs for the entire configured time, it will consume 84 X $runtime cpu hours perl $which_beast < 102 && $datatype && !$no_beagle && $nu_partitions > 39 The job will run on 2 processors as configured. If it runs for the entire configured time, it will consume 2 X $runtime cpu hours perl $which_beast == 102 && $nu_partitions == 1 && $nu_patterns < 1200 && !$no_beagle && !$datatype The job will run on 4 processors as configured. If it runs for the entire configured time, it will consume 4 X $runtime cpu hours perl $which_beast == 102 && $nu_partitions == 1 && $nu_patterns > 1199 && $nu_patterns < 4000 && !$no_beagle && !$datatype The job will run on 8 processors as configured. If it runs for the entire configured time, it will consume 8 X $runtime cpu hours perl $which_beast == 102 && $nu_partitions == 1 && $nu_patterns > 3999 && $nu_patterns < 6000 && !$no_beagle && !$datatype The job will run on 1 processors (and 1 gpu) as configured. If it runs for the entire configured time, it will consume 21 X $runtime cpu hours perl $which_beast == 102 && $nu_partitions == 1 && $nu_patterns > 5999 && !$no_beagle && !$datatype The job will run on 2 processors as configured. If it runs for the entire configured time, it will consume 2 X $runtime cpu hours perl $which_beast == 102 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns < 1200 && !$no_beagle && !$datatype The job will run on 4 processors as configured. If it runs for the entire configured time, it will consume 4 X $runtime cpu hours perl $which_beast == 102 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns > 1199 && $nu_patterns < 5000 && !$no_beagle && !$datatype The job will run on 6 processors as configured. If it runs for the entire configured time, it will consume 6 X $runtime cpu hours perl $which_beast == 102 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns > 4999 && $nu_patterns < 40000 && !$no_beagle && !$datatype The job will run on 1 processors (and 1 gpu) as configured. If it runs for the entire configured time, it will consume 21 X $runtime cpu hours perl $which_beast == 102 && $nu_partitions > 1 && $nu_partitions < 4 && $nu_patterns > 39999 && !$no_beagle && !$datatype The job will run on 2 processors as configured. If it runs for the entire configured time, it will consume 2 X $runtime cpu hours perl $which_beast == 102 && $nu_partitions > 3 && $nu_partitions < 10 && $nu_patterns < 1200 && !$no_beagle && !$datatype The job will run on 4 processors as configured. If it runs for the entire configured time, it will consume 4 X $runtime cpu hours perl $which_beast == 102 && $nu_partitions > 3 && $nu_partitions < 10 && $nu_patterns > 1199 && !$no_beagle && !$datatype The job will run on 4 processors as configured. If it runs for the entire configured time, it will consume 4 X $runtime cpu hours perl $which_beast == 102 && $nu_partitions > 9 && $nu_partitions < 40 && !$no_beagle && !$datatype The job will run on 2 processors as configured. If it runs for the entire configured time, it will consume 2 X $runtime cpu hours perl $which_beast == 102 && $nu_partitions > 39 && !$no_beagle && !$datatype The job will run on 1 processors (and 1 gpu) as configured. If it runs for the entire configured time, it will consume 21 X $runtime cpu hours perl $which_beast == 102 && $datatype && !$no_beagle && $nu_partitions >= 1 && $nu_partitions < 40 The job will run on 24 processors as configured. If it runs for the entire configured time, it will consume 24 X $runtime cpu hours perl $which_beast == 102 && $datatype && !$no_beagle && $nu_partitions > 39 The job will run on 2 processors as configured. If it runs for the entire configured time, it will consume 2 X $runtime cpu hours perl $which_beast >= 104 && $nu_partitions >= 1 && $nu_partitions < 10 && $nu_patterns < 1000 && !$no_beagle && !$datatype The job will run on 4 processors as configured. If it runs for the entire configured time, it will consume 4 X $runtime cpu hours perl $which_beast >= 104 && $nu_partitions >= 1 && $nu_partitions < 10 && $nu_patterns > 999 && $nu_patterns < 10000 && !$no_beagle && !$datatype The job will run on 1 processors and 1 GPU as configured. If it runs for the entire configured time, it will consume 21 X $runtime cpu hours perl $which_beast >= 104 && $nu_partitions >= 1 && $nu_partitions < 10 && $nu_patterns > 9999 && !$no_beagle && !$datatype The job will run on 4 processors as configured. If it runs for the entire configured time, it will consume 4 X $runtime cpu hours perl $which_beast >= 104 && $nu_partitions >= 10 && !$no_beagle && !$datatype The job will run on 1 processors and 1 GPU as configured. If it runs for the entire configured time, it will consume 21 X $runtime cpu hours perl $which_beast >= 104 && !$no_beagle && $datatype Estimate the maximum time your job will need to run. We recommend testimg initially with a < 0.5hr test run because Jobs set for 0.5 h or less dependably run immediately in the "debug" queue. Once you are sure the configuration is correct, you then increase the time. The reason is that jobs > 0.5 h are submitted to the "normal" queue, where jobs configured for 1 or a few hours times may run sooner than jobs configured for the full 168 hours. datatype My data set is Amino Acid Sequences 0 4 Protein sequences require a slightly different configuration than DNA sequences nu_partitions 0 How many partitions does your data have? 1 Please enter an integer for the number of partitions. perl !defined $nu_partitions This option will help the application determine how to run the job nu_patterns 0 How many patterns does your data set have? Please enter an integer greater than 1 for the number of patterns. perl $nu_patterns < 2 Please enter an integer for the number of partitions. perl $nu_patterns < 1 This option will help the application determine how to run the job. You can estimate by giving the number of characters, or take the value from the BEAUTi file. codon_partitioning 0 My data set uses codon partitioning 0 This option will help the application determine how to run the job path_sampling 0 This is a Path Sampling analysis For Path Sampling, your input data must specify: rootdir \= ./tmp/step, where the .\/ is required. The actual directory names given (tmp/step in this example) are arbitary, and can be anything linux accepts perl $path_sampling This option will help the application determine how to run the job spec_seed Specify a seed for this run (by default a random seed is used) 0 4 This option allows the user to specify the random seed BEAST uses, so results can be compared between runs. save_everyval How often do we save to file? (-save_every) perl $which_beast > 102 perl "-save_every $value" 100000 Please enter the number of generations to save after (save_every) perl !defined $save_everyval 4 save_statefile Provide a name for the saved state file (-save_state) perl $which_beast > 102 perl "-save_state $value" saved_state Please enter a name for the saved state file (save_state) perl !defined $save_statefile 4 seed_val Enter the seed value here perl $spec_seed perl "-seed $value" 12345 4 beagle_scaling Set the Beagle Scaling Parameter (the choice can affect performance) perl !$no_beagle perl "-beagle_scaling $value" always always dynamic dynamic dynamic Some discrete data sets will require the always option. The performance cost is several fold, so your run will be much slower using the always option. perl $beagle_scaling eq "always" Some data sets require no scaling, so a choice of scaling:none may improve your job's performance; however, many jobs do require scaling. In particular, some discrete data sets require delayed scaling. From the BEAST mail list, it seems that in general, if your job fails, it is worthwhile to try different values for this parameter. Also, if you have long runs to make, it is useful to look at the impact of this parameter on performance with some short test jobs. In our test data, dynamic scaling runs faster than or the same as delayed scaling, except of course in cases where dynaimc scaling fails for a particular data set. 4 tree_uploads Extra trees file upload tree_file Add a tree file (this must be specified by manually editing your BEAUTi file) treefile.trees 4 treefile1 Please select your second treefile (will be named treefile1.trees) treefile1.trees treefile2 Please select your third treefile (will be named treefile2.trees) perl defined $treefile1 treefile2.trees treefile3 Please select your fourth treefile (will be named treefile3.trees) perl defined $treefile2 treefile3.trees treefile4 Please select your fifth extra treefile (will be named treefile4.trees) perl defined $treefile3 treefile4.trees treefile5 Please select your sixth extra treefile (will be named treefile5.trees) perl defined $treefile4 treefile5.trees treefile6 Please select your seventh extra treefile (will be named treefile6.trees) perl defined $treefile5 treefile6.trees treefile7 Please select your eighth treefile (will be named treefile7.trees) perl defined $treefile6 treefile7.trees treefile8 Please select your ninth treefile (will be named treefile8.trees) perl defined $treefile7 treefile8.trees treefile9 Please select your tenth treefile (will be named treefile9.trees) perl defined $treefile8 treefile9.trees treefile10 Please select your eleventh treefile (will be named treefile10.trees) perl defined $treefile9 treefile10.trees treefile11 Please select your twelfth treefile (will be named treefile11.trees) perl defined $treefile10 treefile11.trees treefile12 Please select your thirteenth treefile (will be named treefile12.trees) perl defined $treefile11 treefile12.trees treefile13 Please select your fourteenth treefile (will be named treefile13.trees) perl defined $treefile12 treefile13.trees treefile14 Please select your fifteenth treefile (will be named treefile14.trees) perl defined $treefile13 treefile14.trees treefile15 Please select your sixteenth treefile (will be named treefile15.trees) perl defined $treefile14 treefile15.trees treefile16 Please select your seventeenth treefile (will be named treefile16.trees) perl defined $treefile15 treefile16.trees treefile17 Please select your eighteenth treefile (will be named treefile17.trees) perl defined $treefile16 treefile17.trees treefile18 Please select your nineteenth treefile (will be named treefile18.trees) perl defined $treefile17 treefile18.trees treefile19 Please select your twentieth treefile (will be named treefile19.trees) perl defined $treefile18 treefile19.trees treefile20 Please select your twenty-first treefile (will be named treefile20.trees) perl defined $treefile19 treefile20.trees treefile21 Please select your twenty-second treefile (will be named treefile21.trees) treefile21.trees perl defined $treefile20 treefile22 Please select your twenty-third treefile (will be named treefile22.trees) perl defined $treefile21 treefile22.trees treefile23 Please select your twenty-fourth treefile (will be named treefile23.trees) perl defined $treefile22 treefile23.trees treefile24 Please select your twenty-fifth treefile (will be named treefile24.trees) perl defined $treefile23 treefile24.trees treefile25 Please select your twenty-sixth treefile (will be named treefile25.trees) perl defined $treefile24 treefile25.trees treefile26 Please select your twenty-seventh treefile (will be named treefile26.trees) perl defined $treefile25 treefile26.trees treefile27 Please select your twenty-eighth treefile (will be named treefile27.trees) perl defined $treefile26 treefile27.trees treefile28 Please select your twenty-ninth treefile (will be named treefile28.trees) perl defined $treefile27 treefile28.trees treefile29 Please select your thirtieth treefile (will be named treefile29.trees) perl defined $treefile28 treefile29.trees treefile30 Please select your thirty-first treefile (will be named treefile30.trees) perl defined $treefile29 treefile30.trees treefile31 Please select your thirty-second treefile (will be named treefile31.trees) perl defined $treefile30 treefile31.trees treefile32 Please select your thirty-third treefile (will be named treefile32.trees) perl defined $treefile31 treefile32.trees treefile33 Please select your thirty-fourth treefile (will be named treefile33.trees) perl defined $treefile32 treefile33.trees treefile34 Please select your thirty-fifth treefile (will be named treefile34.trees) perl defined $treefile33 treefile34.trees treefile35 Please select your thirty-sixth treefile (will be named treefile35.trees) perl defined $treefile34 treefile35.trees treefile36 Please select your thirty-seventh treefile (will be named treefile36.trees) perl defined $treefile35 treefile36.trees treefile37 Please select your thirty-eighth treefile (will be named treefile37.trees) perl defined $treefile36 treefile37.trees treefile38 Please select your thirty-ninth treefile (will be named treefile38.trees) perl defined $treefile37 treefile38.trees treefile39 Please select your fortieth treefile (will be named treefile39.trees) perl defined $treefile38 treefile39.trees treefile40 Please select your forty-first treefile (will be named treefile40.trees) perl defined $treefile39 treefile40.trees treefile41 Please select your forty-second treefile (will be named treefile41.trees) perl defined $treefile40 treefile41.trees treefile42 Please select your forty-third treefile (will be named treefile42.trees) perl defined $treefile41 treefile42.trees treefile43 Please select your forty-fourth treefile (will be named treefile43.trees) perl defined $treefile42 treefile43.trees treefile44 Please select your forty-fifth treefile (will be named treefile44.trees) perl defined $treefile43 treefile44.trees treefile45 Please select your forty-sixth treefile (will be named treefile45.trees) perl defined $treefile44 treefile45.trees treefile46 Please select your forty-seventh treefile (will be named treefile46.trees) perl defined $treefile45 treefile46.trees treefile47 Please select your forty-eighth treefile (will be named treefile47.trees) perl defined $treefile46 treefile47.trees treefile48 Please select your forty-ninth treefile (will be named treefile48.trees) perl defined $treefile47 treefile48.trees treefile49 Please select your fiftieth treefile (will be named treefile49.trees) perl defined $treefile48 treefile49.trees treefile50 Please select your fifty-first treefile (will be named treefile50.trees) perl defined $treefile49 treefile50.trees treefile51 Please select your fifty-second treefile (will be named treefile51.trees) perl defined $treefile50 treefile51.trees treefile52 Please select your fifty-third treefile (will be named treefile52.trees) perl defined $treefile51 treefile52.trees treefile53 Please select your fifty-fourth treefile (will be named treefile53.trees) perl defined $treefile52 treefile53.trees treefile54 Please select your fifty-fifth treefile (will be named treefile54.trees) perl defined $treefile53 treefile54.trees treefile55 Please select your fifty-sixth treefile (will be named treefile55.trees) perl defined $treefile54 treefile55.trees treefile56 Please select your fifty-seventh treefile (will be named treefile56.trees) perl defined $treefile55 treefile56.trees treefile57 Please select your fifty-eighth treefile (will be named treefile57.trees) perl defined $treefile56 treefile57.trees treefile58 Please select your fifty-ninth treefile (will be named treefile58.trees) perl defined $treefile57 treefile58.trees treefile59 Please select your sixtieth treefile (will be named treefile59.trees) perl defined $treefile58 treefile59.trees treefile60 Please select your sixty-first treefile (will be named treefile60.trees) perl defined $treefile59 treefile60.trees treefile61 Please select your sixty-second treefile (will be named treefile61.trees) perl defined $treefile60 treefile61.trees treefile62 Please select your sixty-third treefile (will be named treefile62.trees) perl defined $treefile61 treefile62.trees treefile63 Please select your sixty-fourth treefile (will be named treefile63.trees) perl defined $treefile62 treefile63.trees treefile64 Please select your sixty-fifth treefile (will be named treefile64.trees) perl defined $treefile63 treefile64.trees treefile65 Please select your sixty-sixth treefile (will be named treefile65.trees) perl defined $treefile64 treefile65.trees treefile66 Please select your sixty-seventh treefile (will be named treefile66.trees) perl defined $treefile65 treefile66.trees treefile67 Please select your sixty-eighth treefile (will be named treefile67.trees) perl defined $treefile66 treefile67.trees treefile68 Please select your sixty-ninth treefile (will be named treefile68.trees) perl defined $treefile67 treefile68.trees treefile69 Please select your seventieth treefile (will be named treefile69.trees) perl defined $treefile68 treefile69.trees treefile70 Please select your seventy-first treefile (will be named treefile70.trees) perl defined $treefile69 treefile70.trees treefile71 Please select your seventy-second treefile (will be named treefile71.trees) perl defined $treefile70 treefile71.trees treefile72 Please select your seventy-third treefile (will be named treefile72.trees) perl defined $treefile71 treefile72.trees treefile73 Please select your seventy-fourth treefile (will be named treefile73.trees) perl defined $treefile72 treefile73.trees treefile74 Please select your seventy-fifth treefile (will be named treefile74.trees) perl defined $treefile73 treefile74.trees treefile75 Please select your seventy-sixth treefile (will be named treefile75.trees) perl defined $treefile74 treefile75.trees treefile76 Please select your seventy-seventh treefile (will be named treefile76.trees) perl defined $treefile75 treefile76.trees treefile77 Please select your seventy-eighth treefile (will be named treefile77.trees) perl defined $treefile76 treefile77.trees treefile78 Please select your seventy-ninth treefile (will be named treefile78.trees) perl defined $treefile77 treefile78.trees treefile79 Please select your eightieth treefile (will be named treefile79.trees) perl defined $treefile78 treefile79.trees treefile80 Please select your eighty-first treefile (will be named treefile80.trees) perl defined $treefile79 treefile80.trees treefile81 Please select your eighty-second treefile (will be named treefile81.trees) perl defined $treefile80 treefile81.trees treefile82 Please select your eighty-third treefile (will be named treefile82.trees) perl defined $treefile81 treefile82.trees treefile83 Please select your eighty-fourth treefile (will be named treefile83.trees) perl defined $treefile82 treefile83.trees treefile84 Please select your eighty-fifth treefile (will be named treefile84.trees) perl defined $treefile83 treefile84.trees treefile85 Please select your eighty-sixth treefile (will be named treefile85.trees) perl defined $treefile84 treefile85.trees treefile86 Please select your eighty-seventh treefile (will be named treefile86.trees) perl defined $treefile85 treefile86.trees treefile87 Please select your eighty-eighth treefile (will be named treefile87.trees) perl defined $treefile86 treefile87.trees treefile88 Please select your eighty-ninth treefile (will be named treefile88.trees) perl defined $treefile87 treefile88.trees treefile89 Please select your nintieth treefile (will be named treefile89.trees) perl defined $treefile88 treefile89.trees treefile90 Please select your ninety-first treefile (will be named treefile90.trees) perl defined $treefile89 treefile90.trees treefile91 Please select your ninety-second treefile (will be named treefile91.trees) perl defined $treefile90 treefile91.trees treefile92 Please select your ninety-third treefile (will be named treefile92.trees) perl defined $treefile91 treefile92.trees treefile93 Please select your ninety-fourth treefile (will be named treefile93.trees) perl defined $treefile92 treefile93.trees treefile94 Please select your ninety-fifth treefile (will be named treefile94.trees) perl defined $treefile93 treefile94.trees treefile95 Please select your ninety-sixth treefile (will be named treefile95.trees) perl defined $treefile94 treefile95.trees treefile96 Please select your ninety-seventh treefile (will be named treefile96.trees) perl defined $treefile95 treefile96.trees treefile97 Please select your ninety-eighth treefile (will be named treefile97.trees) perl defined $treefile96 treefile97.trees treefile98 Please select your ninety-ninth treefile (will be named treefile98.trees) perl defined $treefile97 treefile98.trees treefile99 Please select your one hundredth treefile (will be named treefile99.trees) perl defined $treefile98 treefile99.trees treefile100 Please select your one hundred first treefile (will be named treefile100.trees) perl defined $treefile99 treefile100.trees treefile101 Please select your one hundred second treefile (will be named treefile101.trees) perl defined $treefile100 treefile101.trees treefile102 Please select your one hundred third treefile (will be named treefile102.trees) perl defined $treefile101 treefile102.trees treefile103 Please select your one hundred fourth treefile (will be named treefile103.trees) perl defined $treefile102 treefile103.trees treefile104 Please select your one hundred fifth treefile (will be named treefile104.trees) perl defined $treefile103 treefile104.trees treefile105 Please select your one hundred sixth treefile (will be named treefile105.trees) perl defined $treefile104 treefile105.trees treefile106 Please select your one hundred seventh treefile (will be named treefile106.trees) perl defined $treefile105 treefile106.trees treefile107 Please select your one hundred eighth treefile (will be named treefile107.trees) perl defined $treefile106 treefile107.trees treefile108 Please select your one hundred ninth treefile (will be named treefile108.trees) perl defined $treefile107 treefile108.trees treefile109 Please select your one hundred tenth treefile (will be named treefile109.trees) perl defined $treefile108 treefile109.trees treefile110 Please select your one hundred eleventh treefile (will be named treefile110.trees) perl defined $treefile109 treefile110.trees treefile111 Please select your one hundred twelfth treefile (will be named treefile111.trees) perl defined $treefile110 treefile111.trees treefile112 Please select your one hundred thirteenth treefile (will be named treefile112.trees) perl defined $treefile111 treefile112.trees treefile113 Please select your one hundred fourteenth treefile (will be named treefile113.trees) perl defined $treefile112 treefile113.trees treefile114 Please select your one hundred fifteenth treefile (will be named treefile114.trees) perl defined $treefile113 treefile114.trees treefile115 Please select your one hundred sixteenth treefile (will be named treefile115.trees) perl defined $treefile114 treefile115.trees treefile116 Please select your one hundred seventeenth treefile (will be named treefile116.trees) perl defined $treefile115 treefile116.trees treefile117 Please select your one hundred eighteenth treefile (will be named treefile117.trees) perl defined $treefile116 treefile117.trees treefile118 Please select your one hundred nineteenth treefile (will be named treefile118.trees) perl defined $treefile117 treefile118.trees treefile119 Please select your one hundred twentieth treefile (will be named treefile119.trees) perl defined $treefile118 treefile119.trees treefile120 Please select your one hundred twenty-first treefile (will be named treefile120.trees) perl defined $treefile119 treefile120.trees treefile121 Please select your one hundred twenty-second treefile (will be named treefile121.trees) perl defined $treefile120 treefile121.trees treefile122 Please select your one hundred twenty-third treefile (will be named treefile122.trees) perl defined $treefile121 treefile122.trees treefile123 Please select your one hundred twenty-fourth treefile (will be named treefile123.trees) perl defined $treefile122 treefile123.trees treefile124 Please select your one hundred twenty-fifth treefile (will be named treefile124.trees) perl defined $treefile123 treefile124.trees treefile125 Please select your one hundred twenty-sixth treefile (will be named treefile125.trees) perl defined $treefile124 treefile125.trees treefile126 Please select your one hundred twenty-seventh treefile (will be named treefile126.trees) perl defined $treefile125 treefile126.trees treefile127 Please select your one hundred twenty-eighth treefile (will be named treefile127.trees) perl defined $treefile126 treefile127.trees treefile128 Please select your one hundred twenty-ninth treefile (will be named treefile128.trees) perl defined $treefile127 treefile128.trees treefile129 Please select your one hundred thirtieth treefile (will be named treefile129.trees) perl defined $treefile128 treefile129.trees treefile130 Please select your one hundred thirty-first treefile (will be named treefile130.trees) perl defined $treefile129 treefile130.trees treefile131 Please select your one hundred thirty-second treefile (will be named treefile131.trees) perl defined $treefile130 treefile131.trees treefile132 Please select your one hundred thirty-third treefile (will be named treefile132.trees) perl defined $treefile131 treefile132.trees treefile133 Please select your one hundred thirty-fourth treefile (will be named treefile133.trees) perl defined $treefile132 treefile133.trees treefile134 Please select your one hundred thirty-fifth treefile (will be named treefile134.trees) perl defined $treefile133 treefile134.trees treefile135 Please select your one hundred thirty-sixth treefile (will be named treefile135.trees) perl defined $treefile134 treefile135.trees treefile136 Please select your one hundred thirty-seventh treefile (will be named treefile136.trees) perl defined $treefile135 treefile136.trees treefile137 Please select your one hundred thirty-eighth treefile (will be named treefile137.trees) perl defined $treefile136 treefile137.trees treefile138 Please select your one hundred thirty-ninth treefile (will be named treefile138.trees) perl defined $treefile137 treefile138.trees treefile139 Please select your one hundred fortieth treefile (will be named treefile139.trees) perl defined $treefile138 treefile139.trees treefile140 Please select your one hundred forty-first treefile (will be named treefile140.trees) perl defined $treefile139 treefile140.trees treefile141 Please select your one hundred forty-second treefile (will be named treefile141.trees) perl defined $treefile140 treefile141.trees treefile142 Please select your one hundred forty-third treefile (will be named treefile142.trees) perl defined $treefile141 treefile142.trees treefile143 Please select your one hundred forty-fourth treefile (will be named treefile143.trees) perl defined $treefile142 treefile143.trees treefile144 Please select your one hundred forty-fifth treefile (will be named treefile144.trees) perl defined $treefile143 treefile144.trees treefile145 Please select your one hundred forty-sixth treefile (will be named treefile145.trees) perl defined $treefile144 treefile145.trees treefile146 Please select your one hundred forty-seventh treefile (will be named treefile146.trees) perl defined $treefile145 treefile146.trees treefile147 Please select your one hundred forty-eighth treefile (will be named treefile147.trees) perl defined $treefile146 treefile147.trees treefile148 Please select your one hundred forty-ninth treefile (will be named treefile148.trees) perl defined $treefile147 treefile148.trees treefile149 Please select your one hundred fiftieth treefile (will be named treefile149.trees) perl defined $treefile148 treefile149.trees treefile150 Please select your one hundred fifty-first treefile (will be named treefile150.trees) perl defined $treefile149 treefile150.trees treefile151 Please select your one hundred fifty-second treefile (will be named treefile151.trees) perl defined $treefile150 treefile151.trees restart perl ($value) ? "-load_state $save_statefile -force_resume" : "" 4 is_cloudeligible perl "" 0 4