#!/bin/sh
# This is for running on expanse

source $HOME/.bashrc

echo "CIPRES_THREADSPP=$CIPRES_THREADSPP"
echo "CIPRES_NP=$CIPRES_NP"
echo "running:"

module reset
module load cpu/0.15.4 
module load gcc/10.2.0
module load python3
#module load py-cutadapt/2.9
#there is a system module for cutadapt but it seems to be broken
# export MODULEPATH=/expanse/projects/ngbt/opt/expanse/modules:$MODULEPATH

cmdline="/expanse/projects/ngbt/opt/expanse/cutadapt/cutadapt $*"
echo $cmdline
$cmdline